2Q5B - JenaLib

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CU	3	Ligand/Ion	COPPER (II) ION
3	K	5	Ligand/Ion	POTASSIUM ION
4	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	K	-1	Ligand/Ion	POTASSIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Sites (13, 13)

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:38 , HIS A:39 , CYS A:89 , HIS A:92 , MET A:97	BINDING SITE FOR RESIDUE CU A 106
02	AC2	SOFTWARE	ASP A:44 , ASP A:45 , HOH A:613 , HIS B:61 , HOH B:507	BINDING SITE FOR RESIDUE ZN A 107
03	AC3	SOFTWARE	HIS B:39 , CYS B:89 , HIS B:92 , MET B:97	BINDING SITE FOR RESIDUE CU B 106
04	AC4	SOFTWARE	ASP B:45 , HIS C:61 , HOH C:595	BINDING SITE FOR RESIDUE ZN B 107
05	AC5	SOFTWARE	HIS C:39 , CYS C:89 , HIS C:92 , MET C:97	BINDING SITE FOR RESIDUE CU C 106
06	AC6	SOFTWARE	HIS A:61 , ASP C:44 , ASP C:45 , HOH C:505 , HOH C:511	BINDING SITE FOR RESIDUE ZN C 107
07	AC7	SOFTWARE	HIS A:24 , GLU A:104 , HIS C:24 , GLU C:104 , HOH C:582	BINDING SITE FOR RESIDUE ZN C 108
08	AC8	SOFTWARE	GLN B:15 , PHE B:16 , GLY B:96	BINDING SITE FOR RESIDUE K B 502
09	AC9	SOFTWARE	LEU C:42 , ASP C:44 , GLN C:47 , THR C:86 , TYR C:88 , HOH C:513	BINDING SITE FOR RESIDUE K C 501
10	BC1	SOFTWARE	TYR A:88 , HOH A:607 , GLN B:63 , LEU B:64	BINDING SITE FOR RESIDUE K A 502
11	BC2	SOFTWARE	LEU A:42 , PHE A:43 , ASP A:44 , GLN A:47 , THR A:86 , TYR A:88	BINDING SITE FOR RESIDUE K A 501
12	BC3	SOFTWARE	GLN C:15 , PHE C:16	BINDING SITE FOR RESIDUE K C 502
13	BC4	SOFTWARE	LEU A:64 , GLU A:70 , ASP C:44 , ARG C:93	BINDING SITE FOR RESIDUE ACT A 601

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	3	A:82-97 B:82-97 C:82-97

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	1	A:82-97 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	1	- B:82-97 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	1	- - C:82-97

Biological Unit 4 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	3	A:82-97 B:82-97 C:82-97

Biological Unit 5 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	PLAS_PHOLA	116-131	3	A:82-97 B:82-97 C:82-97

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:105
 aligned with PLAS_PHOLA | Q51883 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:105
                                    44        54        64        74        84        94       104       114       124       134     
           PLAS_PHOLA    35 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 139
               SCOP domains d2q5ba_ A: Plastocyanin                                                                                   SCOP domains
               CATH domains 2q5bA00 A:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........ee..eeee...eeeeeee.....eeeee.hhhhhhhhhhhhhhhheeeee.....eeeeee......eeeeee...hhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------COPPER_BLUE     -------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2q5b A   1 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 105
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:105
 aligned with PLAS_PHOLA | Q51883 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:105
                                    44        54        64        74        84        94       104       114       124       134     
           PLAS_PHOLA    35 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 139
               SCOP domains d2q5bb_ B: Plastocyanin                                                                                   SCOP domains
               CATH domains 2q5bB00 B:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........ee..eeee....eeeeee.....eeeee....hhhhhhhhhhhhheeeee.....eeeee.......eeeeee...hhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------COPPER_BLUE     -------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2q5b B   1 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 105
                                    10        20        30        40        50        60        70        80        90       100

Chain C from PDB  Type:PROTEIN  Length:105
 aligned with PLAS_PHOLA | Q51883 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:105
                                    44        54        64        74        84        94       104       114       124       134     
           PLAS_PHOLA    35 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 139
               SCOP domains d2q5bc_ C: Plastocyanin                                                                                   SCOP domains
               CATH domains 2q5bC00 C:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........ee..eeee....eeeeee.....eeeee.hhhhhhhhhhhhhhhheeeee.....eeeee.......eeeeee...hhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------COPPER_BLUE     -------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2q5b C   1 ETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITVEG 105
                                    10        20        30        40        50        60        70        80        90       100

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (1, 3)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PLAS_PHOLA | Q51883)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
	GO:0042651	thylakoid membrane	The pigmented membrane of any thylakoid.

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Asymmetric Unit
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	Cis Peptide Bonds
		Glu A:17 - Pro A:18	[ RasMol ]
		Glu B:17 - Pro B:18	[ RasMol ]
		Glu C:17 - Pro C:18	[ RasMol ]
		Pro A:37 - Pro A:38	[ RasMol ]
		Pro B:37 - Pro B:38	[ RasMol ]
		Pro C:37 - Pro C:38	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
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		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]

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	2q5b
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	PLAS_PHOLA \| Q51883
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)