Chain A from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3sa_ A: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sA00 A:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eee.....eeeeeeee......hhhhhhhhhhhhhhhh..eeeeeeeeee..------.....eeeeeeeee...eeeeee.....hhhhhhhhhhhhh...eeee..hhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s A 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Chain B from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3sb_ B: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sB00 B:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eee.....eeeeeeee......hhhhhhhhhhhhhhhh..eeeeeeeee...------hhhhhheeeeeeee...eeeeee.....hhhhhhhhhhh.....eeee..hhhhhhhhhhhhh.....eeehhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s B 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Chain C from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3sc_ C: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sC00 C:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eee.....eeeeeeee......hhhhhhhhhhhhhhh...eeeeeeeee...------hhhhh.eeeeeeee...eeeeee.....hhhhhhhhhhh.....eeee..hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s C 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Chain D from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3sd_ D: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sD00 D:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........ee.....eeeeeee.......hhhhhhhhhhhhhhh.....eeeeeee...------hhhhh.eeeeeeee...eeeeee.....hhhhhhhhhhhh.....eee..hhhhhhhhhhhhh.....eeehhhhhhhhh.hhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s D 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Chain E from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3se_ E: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sE00 E:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eee.....eeeeeeee......hhhhhhhhhhhhhhhh..eeeeeeeee...------hhhhhheeeeeeee...eeeeee.....hhhhhhhhhhhh....eeee..hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s E 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Chain F from PDB Type:PROTEIN Length:200
aligned with Y5645_ARATH | Q9FNG3 from UniProtKB/Swiss-Prot Length:206
Alignment length:206
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200
Y5645_ARATH 1 MASFDGPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
SCOP domains d2q3sf_ F: Hypothetical protein AT5G06450 SCOP domains
CATH domains 2q3sF00 F:1-206 [code=3.30.420.10, no name defined] CATH domains
Pfam domains (1) --------------------------------------DNA_pol_A_exo1-2q3sF0 1 F:39-206 Pfam domains (1)
Pfam domains (2) --------------------------------------DNA_pol_A_exo1-2q3sF0 2 F:39-206 Pfam domains (2)
Pfam domains (3) --------------------------------------DNA_pol_A_exo1-2q3sF0 3 F:39-206 Pfam domains (3)
Pfam domains (4) --------------------------------------DNA_pol_A_exo1-2q3sF0 4 F:39-206 Pfam domains (4)
Pfam domains (5) --------------------------------------DNA_pol_A_exo1-2q3sF0 5 F:39-206 Pfam domains (5)
Pfam domains (6) --------------------------------------DNA_pol_A_exo1-2q3sF0 6 F:39-206 Pfam domains (6)
Sec.struct. author ........ee.....ee...ee.......hhhhhhhhhhhhhhhh..eeeeeeeee...------......eeeeeeee....eeee......hhhhhhhhhhhh....eeee..hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2q3s F 1 SASFDGPKFKmTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGF------TKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
10| 20 30 40 50 |- | 70 80 90 100 110 120 130 140 150 160 170 180 190 200
11-MSE 59 66
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |