2Q2U - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX

Authors :   C. D. Lima, J. Nandakumar, P. A. Nair, P. Smith, S. Shuman

Date :   29 May 07 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,E,F  (1x)
Biol. Unit 2: B,G,H  (1x)
Biol. Unit 3: C,I,J  (1x)
Biol. Unit 4: D,K,L  (1x)

Keywords :   Ligase, Product-Complex, Protein-Dna Complex, Ligase/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. A. Nair, J. Nandakumar, P. Smith, M. Odell, C. D. Lima, S. Shuman
Structural Basis For Nick Recognition By A Minimal Pluripotent Dna Ligase.
Nat. Struct. Mol. Biol. V. 14 770 2007
PubMed-ID: 17618295 | Reference-DOI: 10.1038/NSMB1266
(for further references see the PDB file header)

*Molecule 1 - 5'- D(TPTPCPCPGPAPTPAPGPTPGPGPGPGPTPCPGPCPAP APT)-3'**
	Chains	:	E, G, I, K
	Engineered	:	YES
	Other Details	:	CHEMICALLY SYNTHSIZED.
	Synthetic	:	YES

*Molecule 2 - 5'-D(APTPTPGPCPGPAPCP(OMC) PCPCPAPCPTPAPTPCPGPGPAPA)-3'**
	Chains	:	F, H, J, L
	Engineered	:	YES
	Other Details	:	CHEMICALLY SYNTHSIZED.
	Synthetic	:	YES

Molecule 3 - CHLORELLA VIRUS DNA LIGASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET16B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	A544R
	Organism Scientific	:	PARAMECIUM BURSARIA CHLORELLA VIRUS 1
	Organism Taxid	:	10506
	Strain	:	CHLORELLA VIRUS

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A				E	F
Biological Unit 2 (1x)	:		B					G	H
Biological Unit 3 (1x)	:			C						I	J
Biological Unit 4 (1x)	:				D							K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	OMC	4	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

(no "Site" information available for 2Q2U)

(no "SS Bond" information available for 2Q2U)

Asymmetric Unit

No.	Residues
1	Phe A:20	-	Pro A:21
2	Phe B:20	-	Pro B:21
3	Phe C:20	-	Pro C:21
4	Phe D:20	-	Pro D:21

(no "SAP(SNP)/Variant" information available for 2Q2U)

(no "PROSITE Motif" information available for 2Q2U)

(no "Exon" information available for 2Q2U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:293
 aligned with O41026_PBCV1 | O41026 from UniProtKB/TrEMBL  Length:298

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         O41026_PBCV1     1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
               SCOP domains -d2q2ua2 A:2-189 ATP-dependent DNA ligase, N-terminal domain                                                                                                                                 d2q2ua1 A:190-293 ATP-dependent DNA ligase                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee..hhhhh...eeeeee...eeeee...eee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeee...eee.hhhhhhhhhhhhhhh...eeeee.................eeee...eeeeeeeeeeeeeeee...ee.......ee..hhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q2u A   1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:293
 aligned with O41026_PBCV1 | O41026 from UniProtKB/TrEMBL  Length:298

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         O41026_PBCV1     1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
               SCOP domains -d2q2ub2 B:2-189 ATP-dependent DNA ligase, N-terminal domain                                                                                                                                 d2q2ub1 B:190-293 ATP-dependent DNA ligase                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee..hhhhh...eeeeee...eeeee...eee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeee...eee.hhhhhhhhhhhhhhh...eeeee.................eeee...eeeeeeeeeeeeeeee...ee.......ee..hhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q2u B   1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain C from PDB  Type:PROTEIN  Length:293
 aligned with O41026_PBCV1 | O41026 from UniProtKB/TrEMBL  Length:298

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         O41026_PBCV1     1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
               SCOP domains -d2q2uc2 C:2-189 ATP-dependent DNA ligase, N-terminal domain                                                                                                                                 d2q2uc1 C:190-293 ATP-dependent DNA ligase                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee..hhhhh...eeeeee...eeeee...eee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeee...eee.hhhhhhhhhhhhhhh...eeeee.................eeee...eeeeeeeeeeeeeeee...ee.......ee..hhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q2u C   1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain D from PDB  Type:PROTEIN  Length:293
 aligned with O41026_PBCV1 | O41026 from UniProtKB/TrEMBL  Length:298

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         O41026_PBCV1     1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
               SCOP domains -d2q2ud2 D:2-189 ATP-dependent DNA ligase, N-terminal domain                                                                                                                                 d2q2ud1 D:190-293 ATP-dependent DNA ligase                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----DNA_ligase_A_M-2q2uD01 D:6-188                                                                                                                                                         --------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----DNA_ligase_A_M-2q2uD02 D:6-188                                                                                                                                                         --------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----DNA_ligase_A_M-2q2uD03 D:6-188                                                                                                                                                         --------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----DNA_ligase_A_M-2q2uD04 D:6-188                                                                                                                                                         --------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .........ee..hhhhh...eeeeee...eeeee...eee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeee...eee.hhhhhhhhhhhhhhh...eeeee.................eeee...eeeeeeeeeeeeeeee...ee.......ee..hhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q2u D   1 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain E from PDB  Type:DNA  Length:21
                                                     
                 2q2u E   1 TTCCGATAGTGGGGTCGCAAT  21
                                    10        20

Chain F from PDB  Type:DNA/RNA  Length:21
                                                     
                 2q2u F  22 ATTGCGACcCCACTATCGGAA  42
                                    31        41 
                                   30-OMC

Chain G from PDB  Type:DNA  Length:21
                                                     
                 2q2u G   1 TTCCGATAGTGGGGTCGCAAT  21
                                    10        20

Chain H from PDB  Type:DNA/RNA  Length:21
                                                     
                 2q2u H  22 ATTGCGACcCCACTATCGGAA  42
                                    31        41 
                                   30-OMC

Chain I from PDB  Type:DNA  Length:21
                                                     
                 2q2u I   1 TTCCGATAGTGGGGTCGCAAT  21
                                    10        20

Chain J from PDB  Type:DNA/RNA  Length:21
                                                     
                 2q2u J  22 ATTGCGACcCCACTATCGGAA  42
                                    31        41 
                                   30-OMC

Chain K from PDB  Type:DNA  Length:21
                                                     
                 2q2u K   1 TTCCGATAGTGGGGTCGCAAT  21
                                    10        20

Chain L from PDB  Type:DNA/RNA  Length:21
                                                     
                 2q2u L  22 ATTGCGACcCCACTATCGGAA  42
                                    31        41 
                                   30-OMC

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 2Q2U)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: DNA_ligase (17)

Family: DNA_ligase_A_M (7)

Paramecium bursaria Chlorella virus 1 (PBCV-1) (3)

1a	DNA_ligase_A_M-2q2uD01	D:6-188
1b	DNA_ligase_A_M-2q2uD02	D:6-188
1c	DNA_ligase_A_M-2q2uD03	D:6-188
1d	DNA_ligase_A_M-2q2uD04	D:6-188

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (O41026_PBCV1 | O41026)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003910	DNA ligase (ATP) activity	Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
	GO:0003909	DNA ligase activity	Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0051103	DNA ligation involved in DNA repair	The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		OMC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 2q2u)

	Cis Peptide Bonds
		Phe A:20 - Pro A:21	[ RasMol ]
		Phe B:20 - Pro B:21	[ RasMol ]
		Phe C:20 - Pro C:21	[ RasMol ]
		Phe D:20 - Pro D:21	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2q2u
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	O41026_PBCV1 \| O41026
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	O41026_PBCV1 \| O41026
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	O41026_PBCV1 \| O41026	:	1fvi
UniProtKB/TrEMBL
	O41026_PBCV1 \| O41026	:	1p8l 2q2t

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File