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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX
Keywords LIGASE, PRODUCT-COMPLEX, PROTEIN-DNA COMPLEX, LIGASE-DNA COM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2Q2U     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*T *AP*AP*T)-3'  E 21 431 0
2  RNA    F 21 405 21
3  Other macromolecule   5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*T *AP*AP*T)-3'  G 21 431 0
4  RNA    H 21 405 21
5  Other macromolecule   5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*T *AP*AP*T)-3'  I 21 431 0
6  RNA    J 21 405 21
7  Other macromolecule   5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*T *AP*AP*T)-3'  K 21 431 0
8  RNA    L 21 405 21
9  Protein   CHLORELLA VIRUS DNA LIGASE  A 293 2360 0
10  Protein   CHLORELLA VIRUS DNA LIGASE  B 293 2360 0
11  Protein   CHLORELLA VIRUS DNA LIGASE  C 293 2360 0
12  Protein   CHLORELLA VIRUS DNA LIGASE  D 293 2360 0
13 Water     56 0 56
total       1396 12784 140
Proteins
Unit 9 MET1 ALA2 ILE3 THR4 LYS5 PRO6 LEU7 LEU8 ALA9 ALA10 THR11 LEU12 GLU13 ASN14 ILE15 GLU16 ASP17 VAL18 GLN19 PHE20 PRO21 CYS22 LEU23 ALA24 THR25 PRO26 LYS27 ILE28 ASP29 GLY30 ILE31 ARG32 SER33 VAL34 LYS35 GLN36 THR37 GLN38 MET39 LEU40 SER41 ARG42 THR43 PHE44 LYS45 PRO46 ILE47 ARG48 ASN49 SER50 VAL51 MET52 ASN53 ARG54 LEU55 LEU56 THR57 GLU58 LEU59 LEU60 PRO61 GLU62 GLY63 SER64 ASP65 GLY66 GLU67 ILE68 SER69 ILE70 GLU71 GLY72 ALA73 THR74 PHE75 GLN76 ASP77 THR78 THR79 SER80 ALA81 VAL82 MET83 THR84 GLY85 HIS86 LYS87 MET88 TYR89 ASN90 ALA91 LYS92 PHE93 SER94 TYR95 TYR96 TRP97 PHE98 ASP99 TYR100 VAL101 THR102 ASP103 ASP104 PRO105 LEU106 LYS107 LYS108 TYR109 ILE110 ASP111 ARG112 VAL113 GLU114 ASP115 MET116 LYS117 ASN118 TYR119 ILE120 THR121 VAL122 HIS123 PRO124 HIS125 ILE126 LEU127 GLU128 HIS129 ALA130 GLN131 VAL132 LYS133 ILE134 ILE135 PRO136 LEU137 ILE138 PRO139 VAL140 GLU141 ILE142 ASN143 ASN144 ILE145 THR146 GLU147 LEU148 LEU149 GLN150 TYR151 GLU152 ARG153 ASP154 VAL155 LEU156 SER157 LYS158 GLY159 PHE160 GLU161 GLY162 VAL163 MET164 ILE165 ARG166 LYS167 PRO168 ASP169 GLY170 LYS171 TYR172 LYS173 PHE174 GLY175 ARG176 SER177 THR178 LEU179 LYS180 GLU181 GLY182 ILE183 LEU184 LEU185 LYS186 MET187 LYS188 GLN189 PHE190 LYS191 ASP192 ALA193 GLU194 ALA195 THR196 ILE197 ILE198 SER199 MET200 THR201 ALA202 LEU203 PHE204 LYS205 ASN206 THR207 ASN208 THR209 LYS210 THR211 LYS212 ASP213 ASN214 PHE215 GLY216 TYR217 SER218 LYS219 ARG220 SER221 THR222 HIS223 LYS224 SER225 GLY226 LYS227 VAL228 GLU229 GLU230 ASP231 VAL232 MET233 GLY234 SER235 ILE236 GLU237 VAL238 ASP239 TYR240 ASP241 GLY242 VAL243 VAL244 PHE245 SER246 ILE247 GLY248 THR249 GLY250 PHE251 ASP252 ALA253 ASP254 GLN255 ARG256 ARG257 ASP258 PHE259 TRP260 GLN261 ASN262 LYS263 GLU264 SER265 TYR266 ILE267 GLY268 LYS269 MET270 VAL271 LYS272 PHE273 LYS274 TYR275 PHE276 GLU277 MET278 GLY279 SER280 LYS281 ASP282 CYS283 PRO284 ARG285 PHE286 PRO287 VAL288 PHE289 ILE290 GLY291 ILE292 ARG293
Unit 10 MET1 ALA2 ILE3 THR4 LYS5 PRO6 LEU7 LEU8 ALA9 ALA10 THR11 LEU12 GLU13 ASN14 ILE15 GLU16 ASP17 VAL18 GLN19 PHE20 PRO21 CYS22 LEU23 ALA24 THR25 PRO26 LYS27 ILE28 ASP29 GLY30 ILE31 ARG32 SER33 VAL34 LYS35 GLN36 THR37 GLN38 MET39 LEU40 SER41 ARG42 THR43 PHE44 LYS45 PRO46 ILE47 ARG48 ASN49 SER50 VAL51 MET52 ASN53 ARG54 LEU55 LEU56 THR57 GLU58 LEU59 LEU60 PRO61 GLU62 GLY63 SER64 ASP65 GLY66 GLU67 ILE68 SER69 ILE70 GLU71 GLY72 ALA73 THR74 PHE75 GLN76 ASP77 THR78 THR79 SER80 ALA81 VAL82 MET83 THR84 GLY85 HIS86 LYS87 MET88 TYR89 ASN90 ALA91 LYS92 PHE93 SER94 TYR95 TYR96 TRP97 PHE98 ASP99 TYR100 VAL101 THR102 ASP103 ASP104 PRO105 LEU106 LYS107 LYS108 TYR109 ILE110 ASP111 ARG112 VAL113 GLU114 ASP115 MET116 LYS117 ASN118 TYR119 ILE120 THR121 VAL122 HIS123 PRO124 HIS125 ILE126 LEU127 GLU128 HIS129 ALA130 GLN131 VAL132 LYS133 ILE134 ILE135 PRO136 LEU137 ILE138 PRO139 VAL140 GLU141 ILE142 ASN143 ASN144 ILE145 THR146 GLU147 LEU148 LEU149 GLN150 TYR151 GLU152 ARG153 ASP154 VAL155 LEU156 SER157 LYS158 GLY159 PHE160 GLU161 GLY162 VAL163 MET164 ILE165 ARG166 LYS167 PRO168 ASP169 GLY170 LYS171 TYR172 LYS173 PHE174 GLY175 ARG176 SER177 THR178 LEU179 LYS180 GLU181 GLY182 ILE183 LEU184 LEU185 LYS186 MET187 LYS188 GLN189 PHE190 LYS191 ASP192 ALA193 GLU194 ALA195 THR196 ILE197 ILE198 SER199 MET200 THR201 ALA202 LEU203 PHE204 LYS205 ASN206 THR207 ASN208 THR209 LYS210 THR211 LYS212 ASP213 ASN214 PHE215 GLY216 TYR217 SER218 LYS219 ARG220 SER221 THR222 HIS223 LYS224 SER225 GLY226 LYS227 VAL228 GLU229 GLU230 ASP231 VAL232 MET233 GLY234 SER235 ILE236 GLU237 VAL238 ASP239 TYR240 ASP241 GLY242 VAL243 VAL244 PHE245 SER246 ILE247 GLY248 THR249 GLY250 PHE251 ASP252 ALA253 ASP254 GLN255 ARG256 ARG257 ASP258 PHE259 TRP260 GLN261 ASN262 LYS263 GLU264 SER265 TYR266 ILE267 GLY268 LYS269 MET270 VAL271 LYS272 PHE273 LYS274 TYR275 PHE276 GLU277 MET278 GLY279 SER280 LYS281 ASP282 CYS283 PRO284 ARG285 PHE286 PRO287 VAL288 PHE289 ILE290 GLY291 ILE292 ARG293
Unit 11 MET1 ALA2 ILE3 THR4 LYS5 PRO6 LEU7 LEU8 ALA9 ALA10 THR11 LEU12 GLU13 ASN14 ILE15 GLU16 ASP17 VAL18 GLN19 PHE20 PRO21 CYS22 LEU23 ALA24 THR25 PRO26 LYS27 ILE28 ASP29 GLY30 ILE31 ARG32 SER33 VAL34 LYS35 GLN36 THR37 GLN38 MET39 LEU40 SER41 ARG42 THR43 PHE44 LYS45 PRO46 ILE47 ARG48 ASN49 SER50 VAL51 MET52 ASN53 ARG54 LEU55 LEU56 THR57 GLU58 LEU59 LEU60 PRO61 GLU62 GLY63 SER64 ASP65 GLY66 GLU67 ILE68 SER69 ILE70 GLU71 GLY72 ALA73 THR74 PHE75 GLN76 ASP77 THR78 THR79 SER80 ALA81 VAL82 MET83 THR84 GLY85 HIS86 LYS87 MET88 TYR89 ASN90 ALA91 LYS92 PHE93 SER94 TYR95 TYR96 TRP97 PHE98 ASP99 TYR100 VAL101 THR102 ASP103 ASP104 PRO105 LEU106 LYS107 LYS108 TYR109 ILE110 ASP111 ARG112 VAL113 GLU114 ASP115 MET116 LYS117 ASN118 TYR119 ILE120 THR121 VAL122 HIS123 PRO124 HIS125 ILE126 LEU127 GLU128 HIS129 ALA130 GLN131 VAL132 LYS133 ILE134 ILE135 PRO136 LEU137 ILE138 PRO139 VAL140 GLU141 ILE142 ASN143 ASN144 ILE145 THR146 GLU147 LEU148 LEU149 GLN150 TYR151 GLU152 ARG153 ASP154 VAL155 LEU156 SER157 LYS158 GLY159 PHE160 GLU161 GLY162 VAL163 MET164 ILE165 ARG166 LYS167 PRO168 ASP169 GLY170 LYS171 TYR172 LYS173 PHE174 GLY175 ARG176 SER177 THR178 LEU179 LYS180 GLU181 GLY182 ILE183 LEU184 LEU185 LYS186 MET187 LYS188 GLN189 PHE190 LYS191 ASP192 ALA193 GLU194 ALA195 THR196 ILE197 ILE198 SER199 MET200 THR201 ALA202 LEU203 PHE204 LYS205 ASN206 THR207 ASN208 THR209 LYS210 THR211 LYS212 ASP213 ASN214 PHE215 GLY216 TYR217 SER218 LYS219 ARG220 SER221 THR222 HIS223 LYS224 SER225 GLY226 LYS227 VAL228 GLU229 GLU230 ASP231 VAL232 MET233 GLY234 SER235 ILE236 GLU237 VAL238 ASP239 TYR240 ASP241 GLY242 VAL243 VAL244 PHE245 SER246 ILE247 GLY248 THR249 GLY250 PHE251 ASP252 ALA253 ASP254 GLN255 ARG256 ARG257 ASP258 PHE259 TRP260 GLN261 ASN262 LYS263 GLU264 SER265 TYR266 ILE267 GLY268 LYS269 MET270 VAL271 LYS272 PHE273 LYS274 TYR275 PHE276 GLU277 MET278 GLY279 SER280 LYS281 ASP282 CYS283 PRO284 ARG285 PHE286 PRO287 VAL288 PHE289 ILE290 GLY291 ILE292 ARG293
Unit 12 MET1 ALA2 ILE3 THR4 LYS5 PRO6 LEU7 LEU8 ALA9 ALA10 THR11 LEU12 GLU13 ASN14 ILE15 GLU16 ASP17 VAL18 GLN19 PHE20 PRO21 CYS22 LEU23 ALA24 THR25 PRO26 LYS27 ILE28 ASP29 GLY30 ILE31 ARG32 SER33 VAL34 LYS35 GLN36 THR37 GLN38 MET39 LEU40 SER41 ARG42 THR43 PHE44 LYS45 PRO46 ILE47 ARG48 ASN49 SER50 VAL51 MET52 ASN53 ARG54 LEU55 LEU56 THR57 GLU58 LEU59 LEU60 PRO61 GLU62 GLY63 SER64 ASP65 GLY66 GLU67 ILE68 SER69 ILE70 GLU71 GLY72 ALA73 THR74 PHE75 GLN76 ASP77 THR78 THR79 SER80 ALA81 VAL82 MET83 THR84 GLY85 HIS86 LYS87 MET88 TYR89 ASN90 ALA91 LYS92 PHE93 SER94 TYR95 TYR96 TRP97 PHE98 ASP99 TYR100 VAL101 THR102 ASP103 ASP104 PRO105 LEU106 LYS107 LYS108 TYR109 ILE110 ASP111 ARG112 VAL113 GLU114 ASP115 MET116 LYS117 ASN118 TYR119 ILE120 THR121 VAL122 HIS123 PRO124 HIS125 ILE126 LEU127 GLU128 HIS129 ALA130 GLN131 VAL132 LYS133 ILE134 ILE135 PRO136 LEU137 ILE138 PRO139 VAL140 GLU141 ILE142 ASN143 ASN144 ILE145 THR146 GLU147 LEU148 LEU149 GLN150 TYR151 GLU152 ARG153 ASP154 VAL155 LEU156 SER157 LYS158 GLY159 PHE160 GLU161 GLY162 VAL163 MET164 ILE165 ARG166 LYS167 PRO168 ASP169 GLY170 LYS171 TYR172 LYS173 PHE174 GLY175 ARG176 SER177 THR178 LEU179 LYS180 GLU181 GLY182 ILE183 LEU184 LEU185 LYS186 MET187 LYS188 GLN189 PHE190 LYS191 ASP192 ALA193 GLU194 ALA195 THR196 ILE197 ILE198 SER199 MET200 THR201 ALA202 LEU203 PHE204 LYS205 ASN206 THR207 ASN208 THR209 LYS210 THR211 LYS212 ASP213 ASN214 PHE215 GLY216 TYR217 SER218 LYS219 ARG220 SER221 THR222 HIS223 LYS224 SER225 GLY226 LYS227 VAL228 GLU229 GLU230 ASP231 VAL232 MET233 GLY234 SER235 ILE236 GLU237 VAL238 ASP239 TYR240 ASP241 GLY242 VAL243 VAL244 PHE245 SER246 ILE247 GLY248 THR249 GLY250 PHE251 ASP252 ALA253 ASP254 GLN255 ARG256 ARG257 ASP258 PHE259 TRP260 GLN261 ASN262 LYS263 GLU264 SER265 TYR266 ILE267 GLY268 LYS269 MET270 VAL271 LYS272 PHE273 LYS274 TYR275 PHE276 GLU277 MET278 GLY279 SER280 LYS281 ASP282 CYS283 PRO284 ARG285 PHE286 PRO287 VAL288 PHE289 ILE290 GLY291 ILE292 ARG293
Nucleic acids
Unit 2 DA22 DT23 DT24 DG25 DC26 DG27 DA28 DC29 OMC30 DC31 DC32 DA33 DC34 DT35 DA36 DT37 DC38 DG39 DG40 DA41 DA42
Unit 4 DA22 DT23 DT24 DG25 DC26 DG27 DA28 DC29 OMC30 DC31 DC32 DA33 DC34 DT35 DA36 DT37 DC38 DG39 DG40 DA41 DA42
Unit 6 DA22 DT23 DT24 DG25 DC26 DG27 DA28 DC29 OMC30 DC31 DC32 DA33 DC34 DT35 DA36 DT37 DC38 DG39 DG40 DA41 DA42
Unit 8 DA22 DT23 DT24 DG25 DC26 DG27 DA28 DC29 OMC30 DC31 DC32 DA33 DC34 DT35 DA36 DT37 DC38 DG39 DG40 DA41 DA42
Other macromolecules
Unit 1 DT1 DT2 DC3 DC4 DG5 DA6 DT7 DA8 DG9 DT10 DG11 DG12 DG13 DG14 DT15 DC16 DG17 DC18 DA19 DA20 DT21
Unit 3 DT1 DT2 DC3 DC4 DG5 DA6 DT7 DA8 DG9 DT10 DG11 DG12 DG13 DG14 DT15 DC16 DG17 DC18 DA19 DA20 DT21
Unit 5 DT1 DT2 DC3 DC4 DG5 DA6 DT7 DA8 DG9 DT10 DG11 DG12 DG13 DG14 DT15 DC16 DG17 DC18 DA19 DA20 DT21
Unit 7 DT1 DT2 DC3 DC4 DG5 DA6 DT7 DA8 DG9 DT10 DG11 DG12 DG13 DG14 DT15 DC16 DG17 DC18 DA19 DA20 DT21
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany