2OZ1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   THE SOXAX COMPLEX OF RHODOVULUM SULFIDOPHILUM

Authors :   M. A. Kihlken, B. C. Berks, A. M. Hemmings

Date :   23 Feb 07 (Deposition) - 08 Jan 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Electron Transfer, Bacterial Sulfur Cycle, Thiosulfate Oxidation, Cysteine Persulfide Heme Ligand, Cytochrome C, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Kihlken, B. C. Berks, A. M. Hemmings
The Crystal Structure Of Recombinant Rhodovulum Sulfidophilum Soxax Confirms Cysteine Persulfide Coordination To The Catalytic Heme
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - DIHEME CYTOCHROME C
	Chains	:	A, C, E, G
	Engineered	:	YES
	Expression System	:	RHODOBACTER CAPSULATUS
	Expression System Plasmid	:	PMKS12
	Expression System Strain	:	37B4DELTADORA
	Expression System Taxid	:	1061
	Expression System Vector Type	:	PLASMID
	Gene	:	SOXA
	Organism Scientific	:	RHODOVULUM SULFIDOPHILUM
	Organism Taxid	:	35806
	Strain	:	1374T

Molecule 2 - CYTOCHROME C
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	RHODOBACTER CAPSULATUS
	Expression System Plasmid	:	PMKS12
	Expression System Strain	:	37B4DELTADORA
	Expression System Taxid	:	1061
	Expression System Vector Type	:	PLASMID
	Gene	:	SOXX
	Organism Scientific	:	RHODOVULUM SULFIDOPHILUM
	Organism Taxid	:	35806
	Strain	:	1374T

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 16)

No.	Name	Count	Type	Full Name
1	CSS	4	Mod. Amino Acid	S-MERCAPTOCYSTEINE
2	HEC	12	Ligand/Ion	HEME C

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CSS	1	Mod. Amino Acid	S-MERCAPTOCYSTEINE
2	HEC	3	Ligand/Ion	HEME C

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CSS	1	Mod. Amino Acid	S-MERCAPTOCYSTEINE
2	HEC	3	Ligand/Ion	HEME C

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	CSS	1	Mod. Amino Acid	S-MERCAPTOCYSTEINE
2	HEC	3	Ligand/Ion	HEME C

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	CSS	1	Mod. Amino Acid	S-MERCAPTOCYSTEINE
2	HEC	3	Ligand/Ion	HEME C

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:75 , CYS A:76 , CYS A:79 , HIS A:80 , MET A:87 , LEU A:90 , TYR A:94 , SER A:100 , ILE A:111 , CYS A:114 , ARG A:118 , MET A:119 , HOH A:982	BINDING SITE FOR RESIDUE HEC A 952
02	AC2	SOFTWARE	GLY A:34 , ARG A:38 , LEU A:175 , SER A:176 , CYS A:177 , CYS A:180 , HIS A:181 , ILE A:189 , ASP A:192 , HIS A:193 , SER A:195 , GLN A:198 , ILE A:199 , PHE A:202 , ARG A:218 , PHE A:219 , CSS A:222 , ILE A:223 , ARG A:260 , ASN A:261 , HOH A:958 , HOH A:975 , HOH A:1010 , HOH A:1020	BINDING SITE FOR RESIDUE HEC A 953
03	AC3	SOFTWARE	TYR A:184 , HOH A:970 , GLY B:40 , ASN B:41 , CYS B:42 , CYS B:45 , HIS B:46 , PRO B:62 , LEU B:64 , VAL B:67 , ARG B:70 , TYR B:71 , ILE B:79 , LEU B:80 , PHE B:87 , THR B:90 , VAL B:91 , MET B:92 , PRO B:93 , TYR B:95 , VAL B:129 , HOH B:1004 , HOH B:1019	BINDING SITE FOR RESIDUE HEC B 951
04	AC4	SOFTWARE	LYS C:74 , ALA C:75 , CYS C:76 , CYS C:79 , HIS C:80 , MET C:87 , LEU C:90 , TYR C:94 , SER C:100 , MET C:110 , ILE C:111 , CYS C:114 , ARG C:115 , ARG C:118 , MET C:119 , HOH C:968 , HOH C:1026 , HOH C:1080	BINDING SITE FOR RESIDUE HEC C 952
05	AC5	SOFTWARE	GLY C:34 , ARG C:38 , LEU C:175 , SER C:176 , CYS C:177 , CYS C:180 , HIS C:181 , ILE C:189 , ASP C:192 , HIS C:193 , LEU C:194 , SER C:195 , GLY C:197 , GLN C:198 , ILE C:199 , PHE C:202 , ARG C:218 , PHE C:219 , CSS C:222 , ILE C:223 , ARG C:260 , ASN C:261 , HOH C:975 , HOH C:1038 , HOH C:1086 , HOH C:1094	BINDING SITE FOR RESIDUE HEC C 953
06	AC6	SOFTWARE	TYR C:184 , HOH C:1104 , CYS D:42 , CYS D:45 , HIS D:46 , VAL D:60 , GLY D:61 , PRO D:62 , LEU D:64 , ARG D:70 , TYR D:71 , LEU D:80 , PHE D:87 , THR D:90 , VAL D:91 , MET D:92 , PRO D:93 , TYR D:95 , MET D:121 , VAL D:129 , LEU D:133 , HOH D:966	BINDING SITE FOR RESIDUE HEC D 951
07	AC7	SOFTWARE	CYS E:76 , CYS E:79 , HIS E:80 , LEU E:90 , TYR E:94 , SER E:100 , MET E:110 , ILE E:111 , CYS E:114 , ARG E:115 , ARG E:118 , MET E:119 , HOH E:954 , HOH E:1014 , GLU H:114	BINDING SITE FOR RESIDUE HEC E 952
08	AC8	SOFTWARE	GLY E:34 , ARG E:38 , LEU E:175 , SER E:176 , CYS E:177 , CYS E:180 , HIS E:181 , ASP E:192 , HIS E:193 , LEU E:194 , SER E:195 , GLY E:197 , GLN E:198 , ILE E:199 , PHE E:202 , ARG E:218 , PHE E:219 , CSS E:222 , ILE E:223 , ARG E:260 , ASN E:261 , HOH E:977 , HOH E:986 , HOH E:994 , HOH E:1067 , HOH E:1136 , HOH E:1143	BINDING SITE FOR RESIDUE HEC E 953
09	AC9	SOFTWARE	TYR E:184 , HOH E:1006 , GLY F:40 , CYS F:42 , CYS F:45 , HIS F:46 , VAL F:60 , GLY F:61 , PRO F:62 , LEU F:64 , ARG F:70 , TYR F:71 , ILE F:79 , LEU F:80 , PHE F:87 , THR F:90 , VAL F:91 , MET F:92 , PRO F:93 , TYR F:95 , VAL F:129 , HOH F:973 , HOH F:1013	BINDING SITE FOR RESIDUE HEC F 951
10	BC1	SOFTWARE	ALA G:75 , CYS G:76 , CYS G:79 , HIS G:80 , MET G:87 , LEU G:90 , TYR G:94 , SER G:100 , ILE G:111 , CYS G:114 , ARG G:118 , MET G:119 , HOH G:975 , HOH G:1055	BINDING SITE FOR RESIDUE HEC G 952
11	BC2	SOFTWARE	GLY G:34 , ARG G:38 , SER G:176 , CYS G:177 , CYS G:180 , HIS G:181 , ILE G:189 , ASP G:192 , HIS G:193 , SER G:195 , GLN G:198 , ILE G:199 , PHE G:202 , ARG G:218 , PHE G:219 , CSS G:222 , ILE G:223 , ARG G:260 , HOH G:956 , HOH G:960 , HOH G:965 , HOH G:1071	BINDING SITE FOR RESIDUE HEC G 953
12	BC3	SOFTWARE	TYR G:184 , HOH G:1021 , ASN H:41 , CYS H:42 , CYS H:45 , HIS H:46 , PRO H:62 , LEU H:64 , ARG H:70 , TYR H:71 , LEU H:80 , PHE H:87 , THR H:90 , VAL H:91 , MET H:92 , PRO H:93 , TYR H:95 , MET H:121 , VAL H:129 , HOH H:990 , HOH H:1012	BINDING SITE FOR RESIDUE HEC H 951

(no "SS Bond" information available for 2OZ1)

Asymmetric Unit

No.	Residues
1	Tyr A:94	-	Pro A:95
2	Phe A:202	-	Pro A:203
3	Gly A:256	-	Pro A:257
4	Tyr C:94	-	Pro C:95
5	Phe C:202	-	Pro C:203
6	Gly C:256	-	Pro C:257
7	Tyr E:94	-	Pro E:95
8	Phe E:202	-	Pro E:203
9	Gly E:256	-	Pro E:257
10	Tyr G:94	-	Pro G:95
11	Phe G:202	-	Pro G:203
12	Gly G:256	-	Pro G:257
13	Ala H:54	-	Gln H:55

(no "SAP(SNP)/Variant" information available for 2OZ1)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	SOXA_RHOSU	74-168	4	A:48-142 C:48-142 E:48-142 G:48-142

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	SOXA_RHOSU	74-168	1	A:48-142 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	SOXA_RHOSU	74-168	1	- C:48-142 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	SOXA_RHOSU	74-168	1	- - E:48-142 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	SOXA_RHOSU	74-168	1	- - - G:48-142

(no "Exon" information available for 2OZ1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:261
 aligned with SOXA_RHOSU | Q939U1 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
           SOXA_RHOSU    27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 287
               SCOP domains d2oz1a1 A:1-150 Di-heme cytochrome c SoxA                                                                                                             d2oz1a2 A:151-261 Di-heme cytochrome c SoxA                                                                     SCOP domains
               CATH domains 2oz1A01 A:1-54,A:146-260 Cytochrome c                 2oz1A02 A:55-142 Cytochrome c                                                           ---2oz1A01 A:1-54,A:146-260 Cytochrome c                                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eee..eee..........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhh..eee....eeehhhhhhhhhhhhhh........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh........hhhhhhh.....ee..ee..........eee....eeehhhhhhhhhhhh.........hhhhhhhhhhhhhhh........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CYTC  PDB: A:48-142 UniProt: 74-168                                                            ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 A   1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGcIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 |     230       240       250       260 
                                                                                                                                                                                                                                                       222-CSS

Chain B from PDB  Type:PROTEIN  Length:135
 aligned with Q939U4_RHOSU | Q939U4 from UniProtKB/TrEMBL  Length:160

    Alignment length:137
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q939U4_RHOSU    23 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 159
               SCOP domains d2oz1b_ B: Mono-heme c-type cytochrome SoxX                                                                                               SCOP domains
               CATH domains 2oz1B00 B:1-137 Cytochrome c                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.................hhhhhhhhh..................--...........hhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 B   1 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMA--QFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 137
                                    10        20        30        40        50 |  |   60        70        80        90       100       110       120       130       
                                                                              52 55

Chain C from PDB  Type:PROTEIN  Length:261
 aligned with SOXA_RHOSU | Q939U1 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
           SOXA_RHOSU    27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 287
               SCOP domains d2oz1c1 C:1-150 Di-heme cytochrome c SoxA                                                                                                             d2oz1c2 C:151-261 Di-heme cytochrome c SoxA                                                                     SCOP domains
               CATH domains 2oz1C01 C:1-54,C:146-260 Cytochrome c                 2oz1C02 C:55-142 Cytochrome c                                                           ---2oz1C01 C:1-54,C:146-260 Cytochrome c                                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eee..eee..........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh.eee....eeehhhhhhhhhhhhh.........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh........hhhhhhh.....ee..ee..........eee....eeehhhhhhhhhhhh.........hhhhhhhhhhhhhhh........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CYTC  PDB: C:48-142 UniProt: 74-168                                                            ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 C   1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGcIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 |     230       240       250       260 
                                                                                                                                                                                                                                                       222-CSS

Chain D from PDB  Type:PROTEIN  Length:137
 aligned with Q939U4_RHOSU | Q939U4 from UniProtKB/TrEMBL  Length:160

    Alignment length:137
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       
         Q939U4_RHOSU    23 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 159
               SCOP domains d2oz1d_ D: Mono-heme c-type cytochrome SoxX                                                                                               SCOP domains
               CATH domains 2oz1D00 D:1-137 Cytochrome c                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.................hhhhhhhhh......hhhhh....................hhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 D   1 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain E from PDB  Type:PROTEIN  Length:261
 aligned with SOXA_RHOSU | Q939U1 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
           SOXA_RHOSU    27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 287
               SCOP domains d2oz1e1 E:1-150 Di-heme cytochrome c SoxA                                                                                                             d2oz1e2 E:151-261 Di-heme cytochrome c SoxA                                                                     SCOP domains
               CATH domains 2oz1E01 E:1-54,E:146-260 Cytochrome c                 2oz1E02 E:55-142 Cytochrome c                                                           ---2oz1E01 E:1-54,E:146-260 Cytochrome c                                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eee..eee..........eee.hhhhhhhhhhhhh......hhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhh.eee....eeehhhhhhhhhhhhh.........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh........hhhhhhh.....ee..ee..........eee....eeehhhhhhhhhhhh.........hhhhhhhhhhhhhh.........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CYTC  PDB: E:48-142 UniProt: 74-168                                                            ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 E   1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGcIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 |     230       240       250       260 
                                                                                                                                                                                                                                                       222-CSS

Chain F from PDB  Type:PROTEIN  Length:138
 aligned with Q939U4_RHOSU | Q939U4 from UniProtKB/TrEMBL  Length:160

    Alignment length:138
                                    32        42        52        62        72        82        92       102       112       122       132       142       152        
         Q939U4_RHOSU    23 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 160
               SCOP domains d2oz1f_ F: Mono-heme c-type cytochrome SoxX                                                                                                SCOP domains
               CATH domains 2oz1F00 F:1-138 Cytochrome c                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh.................hhhhhhhhhhh....hhhhh....................hhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oz1 F   1 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain G from PDB  Type:PROTEIN  Length:261
 aligned with SOXA_RHOSU | Q939U1 from UniProtKB/Swiss-Prot  Length:287

    Alignment length:261
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286 
           SOXA_RHOSU    27 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 287
               SCOP domains d2oz1g1 G:1-150 Di-heme cytochrome c SoxA                                                                                                             d2oz1g2 G:151-261 Di-heme cytochrome c SoxA                                                                     SCOP domains
               CATH domains 2oz1G01 G:1-54,G:146-260 Cytochrome c                 2oz1G02 G:55-142 Cytochrome c                                                           ---2oz1G01 G:1-54,G:146-260 Cytochrome c                                                                              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...eee..eee.hhhhh....eee.hhhhhhhhhhhhh......hhhhhhhhhhhhh..........hhhhhhhhhhhh.hhhhh..ee......eehhhhhhhhhhhhhh........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh........hhhhhhh.....ee..ee..........eee....eeehhhhhhhhhhhh.........hhhhhhhhhhhhhh.........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------CYTC  PDB: G:48-142 UniProt: 74-168                                                            ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oz1 G   1 GPDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGcIRDTRGVPFAVGSPEFVALELYVASRGNGLSVEGPSVRN 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 |     230       240       250       260 
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Chain H from PDB  Type:PROTEIN  Length:138
 aligned with Q939U4_RHOSU | Q939U4 from UniProtKB/TrEMBL  Length:160

    Alignment length:138
                                    32        42        52        62        72        82        92       102       112       122       132       142       152        
         Q939U4_RHOSU    23 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 160
               SCOP domains d2oz1h_ H: Mono-heme c-type cytochrome SoxX                                                                                                SCOP domains
               CATH domains 2oz1H00 H:1-138 Cytochrome c                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........................hhhhhhhhh......hhhhh....................hhhhhhhhhhhhhhhhhhhhh...................................hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oz1 H   1 AEVAPGDVAIDGQGHVARPLTDAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome c (308)

Superfamily: Cytochrome c (308)

Family: Di-heme cytochrome c SoxA (4)

Protein domain: Di-heme cytochrome c SoxA (4)

Rhodovulum sulfidophilum [TaxId: 35806] (4)

1a	d2oz1a1	A:1-150
1b	d2oz1g1	G:1-150
1c	d2oz1g2	G:151-261
1d	d2oz1a2	A:151-261
1e	d2oz1c1	C:1-150
1f	d2oz1c2	C:151-261
1g	d2oz1e1	E:1-150
1h	d2oz1e2	E:151-261

Family: monodomain cytochrome c (197)

Protein domain: Mono-heme c-type cytochrome SoxX (4)

Rhodovulum sulfidophilum [TaxId: 35806] (4)

2a	d2oz1b_	B:
2b	d2oz1d_	D:
2c	d2oz1f_	F:
2d	d2oz1h_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Cytochrome Bc1 Complex; Chain D, domain 2 (279)

Homologous Superfamily: Cytochrome c (279)

Rhodovulum sulfidophilum. Organism_taxid: 35806. Strain: 1374t. (1)

1a	2oz1B00	B:1-137
1b	2oz1D00	D:1-137
1c	2oz1E01	E:1-54,E:146-260
1d	2oz1G01	G:1-54,G:146-260
1e	2oz1F00	F:1-138
1f	2oz1H00	H:1-138
1g	2oz1A02	A:55-142
1h	2oz1C02	C:55-142
1i	2oz1E02	E:55-142
1j	2oz1G02	G:55-142
1k	2oz1A01	A:1-54,A:146-260
1l	2oz1C01	C:1-54,C:146-260

(no "Pfam Domain" information available for 2OZ1)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (SOXA_RHOSU | Q939U1)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016669	oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces a cytochrome.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0016783	sulfurtransferase activity	Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor).
biological process
	GO:0018192	enzyme active site formation via cysteine modification to L-cysteine persulfide	The formation of an enzyme active site via modification of peptidyl-cysteine to peptidyl-L-cysteine persulfide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019418	sulfide oxidation	The chemical reactions and pathways resulting in the conversion of sulfide to elemental sulfur in a higher oxidation state, or to sulfite or sulfate.
	GO:0019417	sulfur oxidation	The chemical reactions and pathways resulting the addition of oxygen to elemental sulfur.
cellular component
	GO:0070069	cytochrome complex	A protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain B,D,F,H (Q939U4_RHOSU | Q939U4)


GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Asymmetric Unit
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	Cis Peptide Bonds
		Ala H:54 - Gln H:55	[ RasMol ]
		Gly A:256 - Pro A:257	[ RasMol ]
		Gly C:256 - Pro C:257	[ RasMol ]
		Gly E:256 - Pro E:257	[ RasMol ]
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		Tyr G:94 - Pro G:95	[ RasMol ]

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	2oz1
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	SOXA_RHOSU \| Q939U1
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	SOXA_RHOSU \| Q939U1
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UniProtKB/Swiss-Prot
	SOXA_RHOSU \| Q939U1	:	1h31 1h32 1h33
UniProtKB/TrEMBL
	Q939U4_RHOSU \| Q939U4	:	1h31 1h32 1h33

1h31	WILD-TYPE PROTEIN, OXIDISED
1h32	WILD-TYPE PROTEIN, REDUCED
1h33	WILD-TYPE PROTEIN, OXIDISED

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 16)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (13, 13)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

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SCOP Domains (2, 12)

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