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2OZ1
Biol. Unit 2
Info
Asym.Unit (284 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
THE SOXAX COMPLEX OF RHODOVULUM SULFIDOPHILUM
Authors
:
M. A. Kihlken, B. C. Berks, A. M. Hemmings
Date
:
23 Feb 07 (Deposition) - 08 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Electron Transfer, Bacterial Sulfur Cycle, Thiosulfate Oxidation, Cysteine Persulfide Heme Ligand, Cytochrome C, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Kihlken, B. C. Berks, A. M. Hemmings
The Crystal Structure Of Recombinant Rhodovulum Sulfidophilum Soxax Confirms Cysteine Persulfide Coordination To The Catalytic Heme
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
1d: S-MERCAPTOCYSTEINE (CSSd)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
2d: HEME C (HECd)
2e: HEME C (HECe)
2f: HEME C (HECf)
2g: HEME C (HECg)
2h: HEME C (HECh)
2i: HEME C (HECi)
2j: HEME C (HECj)
2k: HEME C (HECk)
2l: HEME C (HECl)
View:
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No.
Name
Count
Type
Full Name
1
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
HEC
3
Ligand/Ion
HEME C
[
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
LYS C:74 , ALA C:75 , CYS C:76 , CYS C:79 , HIS C:80 , MET C:87 , LEU C:90 , TYR C:94 , SER C:100 , MET C:110 , ILE C:111 , CYS C:114 , ARG C:115 , ARG C:118 , MET C:119 , HOH C:968 , HOH C:1026 , HOH C:1080
BINDING SITE FOR RESIDUE HEC C 952
2
AC5
SOFTWARE
GLY C:34 , ARG C:38 , LEU C:175 , SER C:176 , CYS C:177 , CYS C:180 , HIS C:181 , ILE C:189 , ASP C:192 , HIS C:193 , LEU C:194 , SER C:195 , GLY C:197 , GLN C:198 , ILE C:199 , PHE C:202 , ARG C:218 , PHE C:219 , CSS C:222 , ILE C:223 , ARG C:260 , ASN C:261 , HOH C:975 , HOH C:1038 , HOH C:1086 , HOH C:1094
BINDING SITE FOR RESIDUE HEC C 953
3
AC6
SOFTWARE
TYR C:184 , HOH C:1104 , CYS D:42 , CYS D:45 , HIS D:46 , VAL D:60 , GLY D:61 , PRO D:62 , LEU D:64 , ARG D:70 , TYR D:71 , LEU D:80 , PHE D:87 , THR D:90 , VAL D:91 , MET D:92 , PRO D:93 , TYR D:95 , MET D:121 , VAL D:129 , LEU D:133 , HOH D:966
BINDING SITE FOR RESIDUE HEC D 951
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTC (C:48-142)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
SOXA_RHOSU
74-168
1
-
C:48-142
-
-
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2oz1a1 (A:1-150)
1b: SCOP_d2oz1g1 (G:1-150)
1c: SCOP_d2oz1g2 (G:151-261)
1d: SCOP_d2oz1a2 (A:151-261)
1e: SCOP_d2oz1c1 (C:1-150)
1f: SCOP_d2oz1c2 (C:151-261)
1g: SCOP_d2oz1e1 (E:1-150)
1h: SCOP_d2oz1e2 (E:151-261)
2a: SCOP_d2oz1b_ (B:)
2b: SCOP_d2oz1d_ (D:)
2c: SCOP_d2oz1f_ (F:)
2d: SCOP_d2oz1h_ (H:)
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Classes
(
)
(
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(
)
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Di-heme cytochrome c SoxA
(4)
Protein domain
:
Di-heme cytochrome c SoxA
(4)
Rhodovulum sulfidophilum [TaxId: 35806]
(4)
1a
d2oz1a1
A:1-150
1b
d2oz1g1
G:1-150
1c
d2oz1g2
G:151-261
1d
d2oz1a2
A:151-261
1e
d2oz1c1
C:1-150
1f
d2oz1c2
C:151-261
1g
d2oz1e1
E:1-150
1h
d2oz1e2
E:151-261
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mono-heme c-type cytochrome SoxX
(4)
Rhodovulum sulfidophilum [TaxId: 35806]
(4)
2a
d2oz1b_
B:
2b
d2oz1d_
D:
2c
d2oz1f_
F:
2d
d2oz1h_
H:
[
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]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2oz1B00 (B:1-137)
1b: CATH_2oz1D00 (D:1-137)
1c: CATH_2oz1E01 (E:1-54,E:146-260)
1d: CATH_2oz1G01 (G:1-54,G:146-260)
1e: CATH_2oz1F00 (F:1-138)
1f: CATH_2oz1H00 (H:1-138)
1g: CATH_2oz1A02 (A:55-142)
1h: CATH_2oz1C02 (C:55-142)
1i: CATH_2oz1E02 (E:55-142)
1j: CATH_2oz1G02 (G:55-142)
1k: CATH_2oz1A01 (A:1-54,A:146-260)
1l: CATH_2oz1C01 (C:1-54,C:146-260)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodovulum sulfidophilum. Organism_taxid: 35806. Strain: 1374t.
(1)
1a
2oz1B00
B:1-137
1b
2oz1D00
D:1-137
1c
2oz1E01
E:1-54,E:146-260
1d
2oz1G01
G:1-54,G:146-260
1e
2oz1F00
F:1-138
1f
2oz1H00
H:1-138
1g
2oz1A02
A:55-142
1h
2oz1C02
C:55-142
1i
2oz1E02
E:55-142
1j
2oz1G02
G:55-142
1k
2oz1A01
A:1-54,A:146-260
1l
2oz1C01
C:1-54,C:146-260
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (284 KB)
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Biol.Unit 1 (73 KB)
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Biol.Unit 3 (74 KB)
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