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(-) Description

Title :  MOEA T100W
 
Authors :  J. Nicolas, S. Xiang, H. Schindelin, K. V. Rajagopalan
Date :  31 Oct 06  (Deposition) - 16 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Molybdopterin, Mpt, Moco, Molybdenum, Moea, Moga, Gephyrin, Cnx1, Cinnamon, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Nichols, S. Xiang, H. Schindelin, K. V. Rajagopalan
Mutational Analysis Of Escherichia Coli Moea: Two Functiona Activities Map To The Active Site Cleft.
Biochemistry V. 46 78 2007
PubMed-ID: 17198377  |  Reference-DOI: 10.1021/BI061551Q

(-) Compounds

Molecule 1 - MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: AH69 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MOEA, BISB, CHLE, NARE
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 29)

Asymmetric/Biological Unit (1, 29)
No.NameCountTypeFull Name
1GOL29Ligand/IonGLYCEROL

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY B:37 , ARG B:176 , LYS B:177 , VAL B:178 , GLY B:217 , SER B:320 , HOH B:534 , HOH B:596BINDING SITE FOR RESIDUE GOL B 501
02AC2SOFTWARELEU B:189 , ASP B:203 , THR B:204 , ASN B:205 , GLY B:251 , GLY B:299BINDING SITE FOR RESIDUE GOL B 502
03AC3SOFTWARETHR B:335 , ALA B:336 , GLU B:362 , VAL B:395 , GLY B:396 , GOL B:515 , HOH B:733BINDING SITE FOR RESIDUE GOL B 503
04AC4SOFTWAREGLU B:188 , ASP B:228 , GLY B:252 , HOH B:640BINDING SITE FOR RESIDUE GOL B 504
05AC5SOFTWARESER A:378 , LEU A:379 , GLY A:380 , HOH A:561 , HOH A:569 , GOL B:514 , HOH B:556BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWAREARG A:206 , LEU A:207 , ASN A:222 , HOH A:596BINDING SITE FOR RESIDUE GOL A 506
07AC7SOFTWAREHOH A:568 , SER B:378 , LEU B:379 , GLY B:380 , HOH B:700BINDING SITE FOR RESIDUE GOL B 507
08AC8SOFTWAREGLY A:186 , ASP A:187 , LEU A:189 , GLN A:190 , GLN A:200BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWARELEU B:216 , GLN B:313 , LEU B:316 , ALA B:317 , GLY B:326 , HOH B:586 , HOH B:596 , HOH B:610 , HOH B:706BINDING SITE FOR RESIDUE GOL B 509
10BC1SOFTWAREGLU A:394 , VAL A:395BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWAREARG A:332 , GOL B:521 , HOH B:683BINDING SITE FOR RESIDUE GOL A 511
12BC3SOFTWAREARG B:179 , GLN B:243 , ALA B:244 , ASP B:245 , HOH B:589BINDING SITE FOR RESIDUE GOL B 512
13BC4SOFTWAREASN B:135 , ILE B:136 , GLU B:141 , GOL B:515 , HOH B:617 , HOH B:644 , HOH B:774BINDING SITE FOR RESIDUE GOL B 513
14BC5SOFTWAREGOL A:505 , GLY B:153 , THR B:154 , ARG B:155 , ASN B:322 , THR B:323 , ALA B:324 , HOH B:720BINDING SITE FOR RESIDUE GOL B 514
15BC6SOFTWAREARG B:131 , SER B:132 , GLN B:134 , GOL B:503 , GOL B:513 , HOH B:644BINDING SITE FOR RESIDUE GOL B 515
16BC7SOFTWAREARG A:332 , GLU A:387 , ARG A:390 , TRP A:398 , GLU A:400BINDING SITE FOR RESIDUE GOL A 516
17BC8SOFTWARETYR A:202 , THR A:204 , PRO A:301 , HOH A:622 , SER B:166BINDING SITE FOR RESIDUE GOL A 517
18BC9SOFTWAREGLU A:270BINDING SITE FOR RESIDUE GOL A 518
19CC1SOFTWAREVAL A:33 , GLN A:34 , CYS A:35 , PHE A:36 , GLU B:214BINDING SITE FOR RESIDUE GOL A 519
20CC2SOFTWAREASP B:228 , ASP B:229 , PRO B:230BINDING SITE FOR RESIDUE GOL B 520
21CC3SOFTWAREARG A:332 , ARG A:334 , TRP A:398 , GOL A:511 , ASP B:142 , SER B:144 , HOH B:683 , HOH B:686BINDING SITE FOR RESIDUE GOL B 521
22CC4SOFTWAREGLY A:391 , ASN A:392BINDING SITE FOR RESIDUE GOL A 522
23CC5SOFTWAREGLU A:188 , ASP A:228 , GLY A:252 , ASP A:259 , HOH A:688BINDING SITE FOR RESIDUE GOL A 523
24CC6SOFTWAREGLU B:115BINDING SITE FOR RESIDUE GOL B 524
25CC7SOFTWAREGLY B:168 , ILE B:169 , ALA B:170BINDING SITE FOR RESIDUE GOL B 525
26CC8SOFTWAREARG A:179 , SER A:242 , GLN A:243 , HIS B:231BINDING SITE FOR RESIDUE GOL A 526
27CC9SOFTWAREHOH A:743 , PHE B:404BINDING SITE FOR RESIDUE GOL A 527
28DC1SOFTWARELEU B:189 , GLN B:190 , ILE B:225 , GOL B:529 , HOH B:785 , HOH B:786BINDING SITE FOR RESIDUE GOL B 528
29DC2SOFTWAREHOH A:548 , LEU B:223 , ILE B:225 , ILE B:226 , GOL B:528 , HOH B:622BINDING SITE FOR RESIDUE GOL B 529

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NQN)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:50 -Pro A:51
2Lys A:279 -Pro A:280
3Val B:50 -Pro B:51
4Lys B:279 -Pro B:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NQN)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MOCF_BIOSYNTHESIS_2PS01079 Molybdenum cofactor biosynthesis proteins signature 2.MOEA_ECOLI254-287
 		  2A:254-287
B:254-287

(-) Exons   (0, 0)

(no "Exon" information available for 2NQN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
 aligned with MOEA_ECOLI | P12281 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:405
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     
           MOEA_ECOLI     6 GLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGG 410
               SCOP domains d2nqna2 A:6-177 Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains                                                                                d2nqna3 A:178-326 MoeA, central domain                                                                                                               d2nqna1 A:327-410 Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....eeeee.hhh........ee.........ee...eeeehhhhhhh.....eeeee..............eeee...........eeee...eee....eee.........ee..........eee.........hhhhhhh....eeeee...eeeeeee...ee..........ee.hhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhheeeeee..ee...eeeeee....eeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..........eeeeeeeeee.....eeeee.........hhhhhh.eeeee...........eeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOCF_BIOSYNTHESIS_2  PDB: A:254-28--------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nqn A   6 GLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMWGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGG 410
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     


Chain B from PDB  Type:PROTEIN  Length:405
 aligned with MOEA_ECOLI | P12281 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:405
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     
           MOEA_ECOLI     6 GLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGG 410
               SCOP domains d2nqnb2 B:6-177 Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains                                                                                d2nqnb3 B:178-326 MoeA, central domain                                                                                                               d2nqnb1 B:327-410 Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -MoeA_N-2nqnB05 B:7-168                                                                                                                                            ------------MoCF_biosynth-2nqnB01 B:181-318                                                                                                           -------------MoeA_C-2nqnB03 B:332-404                                                 ------ Pfam domains (1)
           Pfam domains (2) -MoeA_N-2nqnB06 B:7-168                                                                                                                                            ------------MoCF_biosynth-2nqnB02 B:181-318                                                                                                           -------------MoeA_C-2nqnB04 B:332-404                                                 ------ Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhh.....eeeee.hhh........ee.........ee...eeeehhhhhhhh....eeeee..............eeee...........eeee...eeee..eeee.........ee..........eee.........hhhhhhhh...eeeee...eeeeeee...ee..........ee.hhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhheeeeee..ee...eeeeee....eeee...hhhhhhhhhhhhhhhhhhhhhh.........eeeee..........eeeeeeeeee.....eeeee.........hhhhhh.eeeee...........eeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOCF_BIOSYNTHESIS_2  PDB: B:254-28--------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nqn B   6 GLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMWGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGG 410
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NQN)

(-) Pfam Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: MoCF_biosynth] (31)
(-)
Clan: no clan defined [family: MoeA_C] (15)
(-)
Clan: no clan defined [family: MoeA_N] (15)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (MOEA_ECOLI | P12281)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0061598    molybdopterin adenylyltransferase activity    Catalysis of the reaction ATP + molybdopterin = diphosphate + adenylyl-molybdopterin.
    GO:0061599    molybdopterin molybdotransferase activity    Catalysis of the reaction adenylyl-molybdopterin + molybdate = molybdenum cofactor + AMP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006777    Mo-molybdopterin cofactor biosynthetic process    The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
    GO:0018315    molybdenum incorporation into molybdenum-molybdopterin complex    The incorporation of molybdenum into a molybdenum-molybdopterin complex.
    GO:0032324    molybdopterin cofactor biosynthetic process    The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOEA_ECOLI | P12281: 1fc5 1g8l 1g8r 2nqk 2nqm 2nqq 2nqr 2nqs 2nqu 2nqv 2nro 2nrp 2nrs

(-) Related Entries Specified in the PDB File

1fc5 1g8l 1g8r 1uz5 1wu2 2nqk 2nqm 2nqq 2nqr 2nqs 2nqu 2nqv