1G8R - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   MOEA

Authors :   S. Xiang, J. Nichols, K. V. Rajagopalan, H. Schindelin

Date :   20 Nov 00 (Deposition) - 02 May 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym./Biol. Unit : A,B

Keywords :   Molybdenum Cofactor Biosynthesis, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Xiang, J. Nichols, K. V. Rajagopalan, H. Schindelin
The Crystal Structure Of Escherichia Coli Moea And Its Relationship To The Multifunctional Protein Gephyrin.
Structure V. 9 299 2001
PubMed-ID: 11525167 | Reference-DOI: 10.1016/S0969-2126(01)00588-3

Molecule 1 - MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN
	Chains	:	A, B
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 12)

No.	Name	Count	Type	Full Name
1	GOL	12	Ligand/Ion	GLYCEROL

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP B:203 , THR B:204 , ASN B:205 , SER B:250 , GLY B:251 , GLY B:299 , HOH B:467	BINDING SITE FOR RESIDUE GOL B 412
02	AC2	SOFTWARE	GLY B:37 , ARG B:176 , LYS B:177 , VAL B:178 , LEU B:216 , GLY B:217 , SER B:320 , GOL B:418 , HOH B:515	BINDING SITE FOR RESIDUE GOL B 413
03	AC3	SOFTWARE	HOH A:465 , SER B:378 , LEU B:379 , GLY B:380	BINDING SITE FOR RESIDUE GOL B 414
04	AC4	SOFTWARE	ASP A:241 , ALA A:244 , ASP A:245 , ASN A:291	BINDING SITE FOR RESIDUE GOL A 412
05	AC5	SOFTWARE	SER A:378 , LEU A:379 , GLY A:380 , HOH A:494 , HOH A:506 , HOH B:425	BINDING SITE FOR RESIDUE GOL A 413
06	AC6	SOFTWARE	LYS A:279 , PRO A:280 , GLY A:281 , ARG A:345 , SER A:371 , HOH A:420 , HOH A:447	BINDING SITE FOR RESIDUE GOL A 414
07	AC7	SOFTWARE	ASP B:241 , GLN B:243 , ALA B:244 , ASP B:245 , ASN B:291	BINDING SITE FOR RESIDUE GOL B 415
08	AC8	SOFTWARE	ILE A:201 , ASP A:203 , THR A:204 , ASN A:205 , GLY A:251 , GLY A:299 , HOH A:427	BINDING SITE FOR RESIDUE GOL A 415
09	AC9	SOFTWARE	GLY A:409 , ARG B:155 , ASN B:405 , ALA B:406 , HOH B:447	BINDING SITE FOR RESIDUE GOL B 416
10	BC1	SOFTWARE	GLY B:186 , GLU B:188 , ASP B:228 , GLY B:252 , ASP B:259 , HOH B:495	BINDING SITE FOR RESIDUE GOL B 417
11	BC2	SOFTWARE	ARG B:155 , LEU B:216 , SER B:320 , ASN B:322 , GOL B:413 , HOH B:485	BINDING SITE FOR RESIDUE GOL B 418
12	BC3	SOFTWARE	ASP B:11 , LEU B:14 , ASN B:15	BINDING SITE FOR RESIDUE GOL B 419

(no "SS Bond" information available for 1G8R)

Asymmetric/Biological Unit

No.	Residues
1	Val A:50	-	Pro A:51
2	Lys A:279	-	Pro A:280
3	Val B:50	-	Pro B:51
4	Lys B:279	-	Pro B:280

(no "SAP(SNP)/Variant" information available for 1G8R)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MOCF_BIOSYNTHESIS_2	PS01079	Molybdenum cofactor biosynthesis proteins signature 2.	MOEA_ECOLI	254-287	2	A:254-287 B:254-287

(no "Exon" information available for 1G8R)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:403
 aligned with MOEA_ECOLI | P12281 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:403
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406   
           MOEA_ECOLI     7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG 409
               SCOP domains d1g8ra2 A:7-177 Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains                                                                               d1g8ra3 A:178-326 MoeA, central domain                                                                                                               d1g8ra1 A:327-409 Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain  SCOP domains
               CATH domains 1g8rA01             1g8rA02                 1g8rA03 A:51-142 Molybdopterin biosynthesis moea protein, domain 3.                         1g8rA02 A:27-50,A:143-175        1g8rA01 A:7-26,A:176-328,A:403-409 Molybdenum Cofactor Biosythetic Enzyme; Chain A                                                                       1g8rA04 A:329-402 MoeA C-terminal domain-like                             1g8rA01 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.....eeeee.hhh........ee.........ee...eeee............eeeee..............eeee...........eeee.hhh..................ee..........eee.........hhhhhhhh...eeeee...eeeeeee...ee..........ee.hhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhheeeeee..ee...eeeeee....eeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..........eeeeeeeeee.....eeeee.........hhhhhh.eeeee...........eeeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOCF_BIOSYNTHESIS_2  PDB: A:254-28-------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g8r A   7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG 409
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406

Chain B from PDB  Type:PROTEIN  Length:403
 aligned with MOEA_ECOLI | P12281 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:403
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406   
           MOEA_ECOLI     7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG 409
               SCOP domains d1g8rb2 B:7-177 Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains                                                                               d1g8rb3 B:178-326 MoeA, central domain                                                                                                               d1g8rb1 B:327-409 Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain  SCOP domains
               CATH domains 1g8rB01             1g8rB02                 1g8rB03 B:51-142 Molybdopterin biosynthesis moea protein, domain 3.                         1g8rB02 B:27-50,B:143-175        1g8rB01 B:7-26,B:176-328,B:403-409 Molybdenum Cofactor Biosythetic Enzyme; Chain A                                                                       1g8rB04 B:329-402 MoeA C-terminal domain-like                             1g8rB01 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.....eeeee.hhh........ee.........ee...eeeehhhhhhhh....eeeee..............eeee...........eeee...eeee..eeee.........ee..........eee.........hhhhhhhh...eeeee...eeeeeee...ee..........ee.hhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhh.eeee.........hhhhhhhhhhheeeeee..ee...eeeeee....eeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..........eeeeeeeeee.....eeeee.........hhhhhh.eeeee...........eeeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MOCF_BIOSYNTHESIS_2  PDB: B:254-28-------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g8r B   7 LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG 409
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1G8R)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MOEA_ECOLI | P12281)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0061598	molybdopterin adenylyltransferase activity	Catalysis of the reaction ATP + molybdopterin = diphosphate + adenylyl-molybdopterin.
	GO:0061599	molybdopterin molybdotransferase activity	Catalysis of the reaction adenylyl-molybdopterin + molybdate = molybdenum cofactor + AMP.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
	GO:0018315	molybdenum incorporation into molybdenum-molybdopterin complex	The incorporation of molybdenum into a molybdenum-molybdopterin complex.
	GO:0032324	molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Lys A:279 - Pro A:280	[ RasMol ]
		Lys B:279 - Pro B:280	[ RasMol ]
		Val A:50 - Pro A:51	[ RasMol ]
		Val B:50 - Pro B:51	[ RasMol ]

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	1g8r
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	MOEA_ECOLI \| P12281	:	1fc5 1g8l 2nqk 2nqm 2nqn 2nqq 2nqr 2nqs 2nqu 2nqv 2nro 2nrp 2nrs

1g8l	1G8L CONTAINS THE SAME PROTEIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 6)

CATH Domains (4, 8)

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Gene Ontology (9, 9)

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