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(-) Description

Title :  NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT FROM TFIIH AND THE TRANSACTIVATION DOMAIN 1 OF P65
 
Authors :  L. Lecoq, J. G. Omichinski, L. Raiola, N. Cyr, P. Chabot, G. Arseneault,
Date :  11 Feb 17  (Deposition) - 08 Mar 17  (Release) - 31 May 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription Factor Tfiih, Transactivation Domain, Nuclear Factor Kappa-B, Transcriptional Activation, P62/Tfb1 Subunit, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lecoq, L. Raiola, P. R. Chabot, N. Cyr, G. Arseneault, P. Legault, J. G. Omichinski
Structural Characterization Of Interactions Between Transactivation Domain 1 Of The P65 Subunit Of Nf-Kappa B And Transcription Regulatory Factors.
Nucleic Acids Res. V. 45 5564 2017
PubMed-ID: 28334776  |  Reference-DOI: 10.1093/NAR/GKX146

(-) Compounds

Molecule 1 - RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PGEX-TEV
    Fragment: PLECKSTRIN HOMOLOGY DOMAIN, UNP RESIDUES 2-115
    Gene: TFB1, YDR311W, D9740.3
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT TFB1,TFIIH SUBUNIT TFB1,RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT
 
Molecule 2 - TRANSCRIPTION FACTOR P65
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PGEX-TEV
    Fragment: TRANSACTIVATION DOMAIN 1, UNP RESIDUES 521-551
    Gene: RELA, NFKB3
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE FIRST GS RESIDUES COME FROM A PURIFICATION TAG.
    Synonym: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT,NUCLEAR FACTOR OF KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5URN)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeee......eeeeee.....eeeee...eeeeee........eeeeee.......ee.....ee.....eeeee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5urn A   1 PSHSGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFSFNNRTVMDNIKMTLQQIISRYKDAD 115
                                    10        20        30        40        50        60        70        80        90       100       110     


Chain B from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 5urn B 519 GSPGYPNGLLSGDEDFSSIADMDFSALLSQISS 551
                                   528       538       548
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5URN)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (111, 117)

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  5urn
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  TF65_HUMAN | Q04206
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  TFB1_YEAST | P32776
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TF65_HUMAN | Q04206: 1nfi 2lsp 2o61 3gut 3qxy 3rc0 4kv1 4kv4 5u4k
        TFB1_YEAST | P32776: 1y5o 2gs0 2k2u 2l2i 2lox 2m14 2mkr 2n0y 2n23

(-) Related Entries Specified in the PDB File

6225 CHEMICAL SHIFTS OF FREE TFB1
1y5o NMR STRUCTURE OF THE PH DOMAIN OF TFB1
2gs0 NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF P53
2k2u NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF VP16
2l2i NMR STRUCTURE OF TFB1 IN COMPLEX WITH ACTIVATION DOMAIN OF EKLF
2lox NMR STRUCTURE OF TFB1 IN COMPLEX WITH RAD2
2m14 NMR STRUCTURE OF TFB1 IN COMPLEX WITH RAD4
2mkr NMR STRUCTURES OF THE COMPLEX BETWEEN THE ACIDIC TRANSACTIVATION DOMAIN OF EBNA2 AND THE TFB1 SUBUNIT OF TFIIH.
2n0y NMR STRUCTURE OF THE COMPLEX BETWEEN THE C-TERMINAL DOMAIN OF THE RIFT VALLEY FEVER VIRUS PROTEIN NSS AND THE PH DOMAIN OF THE TFB1 SUBUNIT OF TFIIH RELATED ID: 30243 RELATED DB: BMRB NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT FROM TFIIH AND THE TRANSACTIVATION DOMAIN 1 OF P65