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(-) Description

Title :  NMR STRUCTURE OF THE COMPLEX BETWEEN THE KIX DOMAIN OF CBP AND THE TRANSACTIVATION DOMAIN 1 OF P65
 
Authors :  L. Lecoq, L. Raiola, P. R. Chabot, N. Cyr, G. Arseneault, J. G. Omichinsk
Date :  05 Dec 16  (Deposition) - 08 Mar 17  (Release) - 31 May 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription, P300-Cbp Coactivator Family, Nf-Kb, Transactivation Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lecoq, L. Raiola, P. R. Chabot, N. Cyr, G. Arseneault, P. Legault, J. G. Omichinski
Structural Characterization Of Interactions Between Transactivation Domain 1 Of The P65 Subunit Of Nf-Kappa B And Transcription Regulatory Factors.
Nucleic Acids Res. V. 45 5564 2017
PubMed-ID: 28334776  |  Reference-DOI: 10.1093/NAR/GKX146

(-) Compounds

Molecule 1 - CREB-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KIX DOMAIN (UNP RESIDUES 25-111)
    Gene: CREBBP
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: KIX DOMAIN: RESIDUES 586-672.
 
Molecule 2 - TRANSCRIPTION FACTOR P65
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TRANSACTIVATION DOMAIN 1 (UNP RESIDUES 521-551)
    Gene: RELA, NFKB3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: P65 TRANSACTIVATION DOMAIN 1, RESIDUES 532-551.
    Synonym: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT,NUCLEAR FACTOR OF KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 3

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5U4K)

(-) Sites  (0, 0)

(no "Site" information available for 5U4K)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 5u4k A 586 GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRL 672
                                   595       605       615       625       635       645       655       665       


Chain B from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 5u4k B 519 GSPGYPNGLLSGDEDFSSIADMDFSALLSQISS 551
                                   528       538       548
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U4K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U4K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U4K)

(-) Gene Ontology  (131, 148)

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  TF65_HUMAN | Q04206
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBP_MOUSE | P45481: 1f81 1jjs 1kbh 1kdx 1l8c 1r8u 1sb0 1tot 1u2n 2agh 2c52 2ka4 2ka6 2kkj 2l14 2lqh 2lqi 2lww 4i9o 5hou 5hp0 5hpd
        TF65_HUMAN | Q04206: 1nfi 2lsp 2o61 3gut 3qxy 3rc0 4kv1 4kv4 5urn

(-) Related Entries Specified in the PDB File

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