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(-) Description

Title :  NMR STRUCTURE OF THE COMPLEX BETWEEN THE C-TERMINAL DOMAIN OF THE RIFT VALLEY FEVER VIRUS PROTEIN NSS AND THE PH DOMAIN OF THE TFB1 SUBUNIT OF TFIIH
 
Authors :  N. Cyr, C. De La Fuente, L. Lecoq, I. Guendel, P. R. Chabot, K. Kehn-Hal J. G. Omichinski
Date :  18 Mar 15  (Deposition) - 22 Apr 15  (Release) - 27 May 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription, Virulence, Viral Protein-Transcription Complex, Drug Target, Virus-Host Interface, Transcription-Viral Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Cyr, C. De La Fuente, L. Lecoq, I. Guendel, P. R. Chabot, K. Kehn-Hall, J. G. Omichinski
A Omega Xav Motif In The Rift Valley Fever Virus Nss Protei Is Essential For Degrading P62, Forming Nuclear Filaments And Virulence.
Proc. Natl. Acad. Sci. Usa V. 112 6021 2015
PubMed-ID: 25918396  |  Reference-DOI: 10.1073/PNAS.1503688112

(-) Compounds

Molecule 1 - RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: TOPP2
    Expression System Taxid: 562
    Expression System Vector: PGEX-2T
    Fragment: PLECKSTRIN HOMOLOGY DOMAIN RESIDUES 1-115
    Gene: D9740.3, TFB1, YDR311W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT
 
Molecule 2 - NON-STRUCTURAL PROTEIN NS-S
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: TOPP2
    Expression System Taxid: 562
    Expression System Vector: PGEX-2T
    Fragment: C-TERMINAL DOMAIN RESIDUES247-265
    Gene: NSS
    Organism Scientific: RIFT VALLEY FEVER VIRUS
    Organism Taxid: 11589
    Strain: ZH-548 M12

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N0Y)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..ee..eeeeeeee......eeeeee.....eeeee...eeeeee........eeeeee.....................eeeee..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2n0y A   1 PSHSGAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFSFNNRTVMDNIKMTLQQIISRYKDAD 115
                                    10        20        30        40        50        60        70        80        90       100       110     


Chain B from PDB  Type:PROTEIN  Length:24
                                                        
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ..........hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 2n0y B 242 GGGGYDVEMESEEESDDDGFVEVD 265
                                   251       261
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N0Y)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (29, 29)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TFB1_YEAST | P32776: 1y5o 2gs0 2k2u 2l2i 2lox 2m14 2mkr 2n23 5urn

(-) Related Entries Specified in the PDB File

6225
1y5o RELATED ID: 25540 RELATED DB: BMRB
2lox RELATED ID: 18842 RELATED DB: BMRB RELATED ID: 18229 RELATED DB: BMRB
2m14