2MQS - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   TRANSIENT COLLAGEN TRIPLE HELIX BINDING TO A KEY METALLOPROTEINASE IN INVASION AND DEVELOPMENT: SPIN LABELS TO STRUCTURE

Authors :   Y. Zhao, T. Marcink, S. R. Van Doren

Date :   26 Jun 14 (Deposition) - 11 Feb 15 (Release) - 11 Feb 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B,C,D  (15x)
NMR Structure *: A,B,C,D  (1x)

Keywords :   Protein/Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhao, T. C. Marcink, R. Stawikowska, R. R Sanganna Gari, B. P. Marsh, G. M. King, G. B. Fields, S. R. Van Doren
Transient Collagen Triple Helix Binding To A Key Metalloproteinase In Invasion And Development
Structure V. 23 257 2015
PubMed: search

Molecule 1 - MATRIX METALLOPROTEINASE-14
	Chains	:	A
	EC Number	:	3.4.24.80
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PET-27B(+)
	Gene	:	MMP14
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	MMP-14, MMP-X1, MEMBRANE-TYPE MATRIX METALLOPROTEINASE 1, MT-MMP 1, MTMMP1, MEMBRANE-TYPE-1 MATRIX METALLOPROTEINASE, MT1-MMP, MT1MMP

Molecule 2 - THP_L_AND_M_CHAIN
	Chains	:	B, C
	Engineered	:	YES
	Other Details	:	THE PEPTIDE IS DERIVED FROM A SEQUENCE REGION WITHIN HUMAN COLLAGENS I, II, AND III
	Synthetic	:	YES

Molecule 3 - THP_T_CHAIN
	Chains	:	D
	Engineered	:	YES
	Other Details	:	THE PEPTIDE IS DERIVED FROM A SEQUENCE REGION WITHIN HUMAN COLLAGENS I, II, AND III
	Synthetic	:	YES

		1	2	3	4
NMR Structure (15x)	:	A	B	C	D
NMR Structure * (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

NMR Structure (1, 23)

No.	Name	Count	Type	Full Name
1	HYP	23	Mod. Amino Acid	4-HYDROXYPROLINE

NMR Structure * (1, 23)

No.	Name	Count	Type	Full Name
1	HYP	23	Mod. Amino Acid	4-HYDROXYPROLINE

(no "Site" information available for 2MQS)

NMR Structure

No.	Residues
1	A:319	-	A:508

NMR Structure

No.	Model	Residues
1	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15	Tyr A:353	-	Pro A:354
2	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15	Tyr A:399	-	Pro A:400
3	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15	Tyr A:449	-	Pro A:450
4	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15	Tyr A:497	-	Pro A:498

(no "SAP(SNP)/Variant" information available for 2MQS)

NMR Structure (2, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEMOPEXIN_2	PS51642	Hemopexin repeat profile.	MMP14_HUMAN	316-364 365-410 412-460 461-508	4	A:316-364 A:365-410 A:412-460 A:461-508
2	HEMOPEXIN	PS00024	Hemopexin domain signature.	MMP14_HUMAN	357-372	1	A:357-372

NMR Structure * (2, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEMOPEXIN_2	PS51642	Hemopexin repeat profile.	MMP14_HUMAN	316-364 365-410 412-460 461-508	4	A:316-364 A:365-410 A:412-460 A:461-508
2	HEMOPEXIN	PS00024	Hemopexin domain signature.	MMP14_HUMAN	357-372	1	A:357-372

(no "Exon" information available for 2MQS)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...eeeee..eeeeee..eeeeee..ee.....eehhhhh........eeee.....eeeee..eeeeee..ee.....eehhhhh.........eeeee....eeeeee..eeeeee....ee.....ee.hhh.........eee.....eeeeee..eeeeee....ee.....eehhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mqs A 316 PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSG 511
                                   325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505

Chain B from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 2mqs B   0 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPpGPp  35
                              |  |  |9        19   |  | 29  |  |
                              2-HYP |             23-HYP |  |  |
                                 5-HYP               26-HYP |  |
                                    8-HYP               29-HYP |
                                                           32-HYP
                                                              35-HYP

Chain C from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 2mqs C 100 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPpGPp 135
                              |  | 109       119   |  |129  |  |
                              |  |  |            123-HYP |  |  |
                            102-HYP |               126-HYP |  |
                               105-HYP                 129-HYP |
                                  108-HYP                 132-HYP
                                                             135-HYP

Chain D from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 2mqs D 200 GPpGPpGPpGPQGIAGQRGVVGLpGPpGPpGPp 232
                              |  | 209       219   |  |229  |
                              |  |  |            223-HYP |  |
                            202-HYP |               226-HYP |
                               205-HYP                 229-HYP
                                  208-HYP                 232-HYP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2MQS)

(no "CATH Domain" information available for 2MQS)

(no "Pfam Domain" information available for 2MQS)

NMR Structure(hide GO term definitions)

NMR Structure
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	Sites
(no "Sites" information available for 2mqs)

	Cis Peptide Bonds
		Tyr A:353 - Pro A:354	[ RasMol ]
		Tyr A:399 - Pro A:400	[ RasMol ]
		Tyr A:449 - Pro A:450	[ RasMol ]
		Tyr A:497 - Pro A:498	[ RasMol ]

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	MMP14_HUMAN \| P50281	:	1bqq 1buv 3c7x 3ma2 3x23 4p3c 4p3d 4qxu

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 23)

Sites (0, 0)

SS Bonds (1, 1)

Cis Peptide Bonds (4, 60)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 5)

Exons (0, 0)

Sequences/Alignments

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Gene Ontology (55, 55)

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