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(-) Description

Title :  CALMODULIN, I85L, F92E, H107I, L112R, A128T, M144R MUTANT
 
Authors :  Y. S. Moroz, Y. Wu, H. Cheng, H. Roder, I. V. Korendovych
Date :  25 Jan 13  (Deposition) - 24 Jul 13  (Release) - 13 Aug 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Calmodulin, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. V. Moroz, Y. S. Moroz, Y. Wu, A. B. Olsen, H. Cheng, K. L. Mack, J. M. Mclaughlin, E. A. Raymond, K. Zhezherya, H. Roder, I. V. Korendovych
A Single Mutation In A Regulatory Protein Produces Evolvabl Allosterically Regulated Catalyst Of Nonnatural Reaction.
Angew. Chem. Int. Ed. Engl. V. 52 6246 2013
PubMed-ID: 23630096  |  Reference-DOI: 10.1002/ANIE.201302339

(-) Compounds

Molecule 1 - CALMODULIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEXP5-NT/TOPO
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1-149
    GeneCALM, CAM, RCJMB04_24E7
    MutationYES
    Organism CommonCHICKEN
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    SynonymCAM

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

NMR Structure (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:23 , ASP A:25 , ASP A:27 , THR A:29 , GLU A:34BINDING SITE FOR RESIDUE CA A 201
2AC2SOFTWAREASP A:59 , ASP A:61 , ASN A:63 , THR A:65 , GLU A:70BINDING SITE FOR RESIDUE CA A 202
3AC3SOFTWAREASP A:96 , ASP A:98 , ASN A:100 , TYR A:102 , GLU A:107BINDING SITE FOR RESIDUE CA A 203
4AC4SOFTWAREASP A:132 , ASP A:134 , ASP A:136 , GLN A:138 , GLU A:143BINDING SITE FOR RESIDUE CA A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2M3S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2M3S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2M3S)

(-) PROSITE Motifs  (2, 8)

NMR Structure (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM_CHICK8-43
44-79
81-116
117-149
  4A:10-45
A:46-81
A:83-118
A:119-151
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM_CHICK21-33
57-69
94-106
130-142
  4A:23-35
A:59-71
A:96-108
A:132-144
NMR Structure * (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM_CHICK8-43
44-79
81-116
117-149
  4A:10-45
A:46-81
A:83-118
A:119-151
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM_CHICK21-33
57-69
94-106
130-142
  4A:23-35
A:59-71
A:96-108
A:132-144

(-) Exons   (0, 0)

(no "Exon" information available for 2M3S)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with CALM_CHICK | P62149 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:151
                              1                                                                                                                                                    
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148 
           CALM_CHICK     - --MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d2m3sa_ A: Calmodulin                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.........hhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------EF_HAND_2  PDB: A:10-45             EF_HAND_2  PDB: A:46-81             -EF_HAND_2  PDB: A:83-118            EF_HAND_2  PDB: A:119-151         PROSITE (1)
                PROSITE (2) ----------------------EF_HAND_1    -----------------------EF_HAND_1    ------------------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m3s A   1 SLMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEELREAFRVEDKDGNGYISAAELRIVMTNRGEKLTDEEVDEMIRETDIDGDGQVNYEEFVQRMTAK 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2M3S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2M3S)

(-) Gene Ontology  (31, 31)

NMR Structure(hide GO term definitions)
Chain A   (CALM_CHICK | P62149)
molecular function
    GO:0031997    N-terminal myristoylation domain binding    Interacting selectively and non-covalently with the N-terminus of a protein that has the potential to be, or has been, modified by N-terminal myristoylation. Binding affinity is typically altered by myristoylation; for example, N-terminal myristoylation of HIV Nef increases its affinity for calmodulin.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0044325    ion channel binding    Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0017022    myosin binding    Interacting selectively and non-covalently with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments.
    GO:0043274    phospholipase binding    Interacting selectively and non-covalently with any phospholipase, enzymes that catalyze of the hydrolysis of a glycerophospholipid.
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0072542    protein phosphatase activator activity    Increases the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule.
    GO:0031996    thioesterase binding    Interacting selectively and non-covalently with any thioesterase enzyme.
    GO:0031432    titin binding    Interacting selectively and non-covalently with titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively.
biological process
    GO:0005513    detection of calcium ion    The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal.
    GO:0030801    positive regulation of cyclic nucleotide metabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides.
    GO:0051343    positive regulation of cyclic-nucleotide phosphodiesterase activity    Any process that activates or increases the frequency, rate or extent of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate.
    GO:0032516    positive regulation of phosphoprotein phosphatase activity    Any process that activates or increases the activity of a phosphoprotein phosphatase.
    GO:0035307    positive regulation of protein dephosphorylation    Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein.
    GO:0060316    positive regulation of ryanodine-sensitive calcium-release channel activity    Any process that increases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0055117    regulation of cardiac muscle contraction    Any process that modulates the frequency, rate or extent of cardiac muscle contraction.
    GO:0032465    regulation of cytokinesis    Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells.
    GO:0002027    regulation of heart rate    Any process that modulates the frequency or rate of heart contraction.
    GO:0010880    regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum    Any process that modulates the rate, frequency or extent of release of sequestered calcium ion into cytosol by the sarcoplasmic reticulum, the process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.
    GO:0051592    response to calcium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0021762    substantia nigra development    The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
cellular component
    GO:0034704    calcium channel complex    An ion channel complex through which calcium ions pass.
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0030017    sarcomere    The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
    GO:0005876    spindle microtubule    Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.
    GO:0000922    spindle pole    Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
    GO:0031982    vesicle    Any small, fluid-filled, spherical organelle enclosed by membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM_CHICK | P621491ahr 1aji 1cm1 1cm4 1deg 1k90 1k93 1lvc 1nkf 1qiv 1qiw 1sk6 1up5 2bcx 2bki 2kz2 2o5g 2o60 2vb6 3cln 3gof 3gp2 4bya 5hit

(-) Related Entries Specified in the PDB File

2kz2 RELATED ID: 18976 RELATED DB: BMRB RELATED ID: 16994 RELATED DB: BMRB