2M1K - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   INTERACTION OF HUMAN S100A6 (C3S) WITH V DOMAIN OF RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS (RAGE)

Authors :   A. A. Gupta, C. Yu

Date :   29 Nov 12 (Deposition) - 25 Mar 15 (Release) - 25 Mar 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B,C,D  (20x)
NMR Structure *: A,B,C,D  (1x)

Keywords :   S100A6 C3S, Rage V, Heterotetrameric, Haddock Model, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. K. Mohan, A. A. Gupta, C. Yu
Interaction Of The S100A6 Mutant (C3S) With The V Domain Of The Receptor For Advanced Glycation End Products (Rage).
Biochem. Biophys. Res. Commun. V. 434 328 2013
PubMed-ID: 23537648 | Reference-DOI: 10.1016/J.BBRC.2013.03.049

Molecule 1 - PROTEIN S100-A6
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET(20B)+
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CACY, S100A6
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CALCYCLIN, GROWTH FACTOR-INDUCIBLE PROTEIN 2A9, MLN 4, PROLACTIN RECEPTOR-ASSOCIATED PROTEIN, PRA, S100 CALCIUM-BINDING PROTEIN A6

Molecule 2 - ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET(15B)+
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 23-121
	Gene	:	AGER, RAGE
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS

		1	2	3	4
NMR Structure (20x)	:	A	B	C	D
NMR Structure * (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2M1K)

(no "Site" information available for 2M1K)

NMR Structure

No.	Residues
1	A:38	-	A:99
2	C:38	-	C:99

(no "Cis Peptide Bond" information available for 2M1K)

(no "SAP(SNP)/Variant" information available for 2M1K)

NMR Structure (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10A6_HUMAN	48-83	2	B:48-83 D:48-83
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10A6_HUMAN	56-77	2	B:56-77 D:56-77
3	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	S10A6_HUMAN	61-73	2	B:61-73 D:61-73

NMR Structure * (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	S10A6_HUMAN	48-83	2	B:48-83 D:48-83
2	S100_CABP	PS00303	S-100/ICaBP type calcium binding protein signature.	S10A6_HUMAN	56-77	2	B:56-77 D:56-77
3	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	S10A6_HUMAN	61-73	2	B:61-73 D:61-73

(no "Exon" information available for 2M1K)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee..........eeeeeee................hhhhhh......eeeeeee.....eeeeeeee.........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2m1k A  21 AMAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP 121
                                    30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:89
                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2m1k B   2 ASPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG  90
                                    11        21        31        41        51        61        71        81

Chain C from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeee..........eeeeeee................hhhhhh......eeeeeee.....eeeeeeee.........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 2m1k C  21 AMAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP 121
                                    30        40        50        60        70        80        90       100       110       120

Chain D from PDB  Type:PROTEIN  Length:89
                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2m1k D   2 ASPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG  90
                                    11        21        31        41        51        61        71        81

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2M1K)

(no "CATH Domain" information available for 2M1K)

(no "Pfam Domain" information available for 2M1K)

NMR Structure(hide GO term definitions)

NMR Structure
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1k9k	HADDOCK STARTING STRUCTURE
2e5e	HADDOCK STARTING STRUCTURE

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (2, 2)

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