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(-)NMR Structure - model 1
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(-) Description

Authors :  Y. C. Lou, S. Y. Wei, M. Rajasekaran, C. C. Chou, H. M. Hsu, J. H. Tai, C. Chen
Date :  21 Jan 09  (Deposition) - 17 Mar 09  (Release) - 17 Mar 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (10x)
Keywords :  Myb1, R2R3 Domain, Dna-Binding, Nucleus, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  Y. C. Lou, S. Y. Wei, M. Rajasekaran, C. C. Chou, H. M. Hsu, J. H. Tai, C. Chen
Nmr Structural Analysis Of Dna Recognition By A Novel Myb1 Dna-Binding Domain In The Protozoan Parasite Trichomonas Vaginalis.
Nucleic Acids Res. 2009
PubMed-ID: 19246540  |  Reference-DOI: 10.1093/NAR/GKP097
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MYB24
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System VectorPET29B
    Expression System Vector TypeVECTOR
    FragmentMYB1 R2R3 DOMAIN
    Organism ScientificTRICHOMONAS VAGINALIS
    Organism Taxid5722
Molecule 2 - 5'- D(*AP*AP*GP*AP*TP*AP*AP*CP*GP*AP*TP*AP*TP*TP*TP*A)-3'
Molecule 3 - 5'- D(*TP*AP*AP*AP*TP*AP*TP*CP*GP*TP*TP*AP*TP*CP*TP*T)-3'

 Structural Features

(-) Chains, Units

NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:107
 aligned with Q58HP2_TRIVA | Q58HP2 from UniProtKB/TrEMBL  Length:206

    Alignment length:107
                                    44        54        64        74        84        94       104       114       124       134       
               SCOP domains d2kdza1 A:1-49 automated matches                 d2kdza2 A:50-107 automated matches                         SCOP domains
               CATH domains 2kdzA01 A:1-53 Homeodomain-like                      2kdzA02 A:54-107 Homeodomain-like                      CATH domains
               Pfam domains ---Myb_DNA-bind_6-2kdzA01 A:4-64                                ------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhh.........hhhhhhhhhhhhhh...hhhhhh......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                                    10        20        30        40        50        60        70        80        90       100       

Chain B from PDB  Type:DNA  Length:16
                 2kdz B   1 AAGATAACGATATTTA  16

Chain C from PDB  Type:DNA  Length:16
                 2kdz C  17 TAAATATCGTTATCTT  32

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 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 2)

NMR Structure

(-) Pfam Domains  (1, 1)

NMR Structure
Clan: HTH (544)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q58HP2_TRIVA | Q58HP2)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        Q58HP2_TRIVA | Q58HP22k9n

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