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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ADENYLOSUCCINATE LYASE IN COMPLEX WITH AMP
 
Authors :  P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hamma B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, I. Johansson, T. Ka U. Kosinska, T. Kotenyova, A. Magnusdottir, M. E. Nilsson, P. Nilsson T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Uppsten, A. G. Thorsell, S. Van Den Berg, K. Wallden, J. Weigelt, P. Nordlund
Date :  01 Nov 06  (Deposition) - 07 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Disease Mutation, Adenylosuccinase, Succino Amp-Lyase, Purine Biosynthesis, Adenylosuccinate Lyase, Adenylosuccinase Deficiency, Amp, Adsl, Lyase, Saicar, Purine, S-Amp, Epilepsy (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, I. Johansson, T. Karlberg, U. Kosinska, T. Kotenyova, A. Magnusdottir, M. E. Nilsson, P. Nilsson-Ehle, T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Uppsten, A. G. Thorsell, S. Van Den Berg, K. Wallden, J. Weigelt, P. Nordlund
Crystal Structure Of Human Adenylosuccinate Lyase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADENYLOSUCCINATE LYASE
    Chains: A, B, C, D
    EC Number: 4.3.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-BSA4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PNIC-BSA4
    Fragment: RESIDUES 1-481
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADENYLOSUCCINASE, ASL, ASASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2CL4Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:111 , TYR A:114 , ARG A:196 , LYS A:199 , GLY A:200BINDING SITE FOR RESIDUE CL A1001
02AC2SOFTWARETHR B:111 , ARG B:196 , LYS B:199 , GLY B:200BINDING SITE FOR RESIDUE CL B1001
03AC3SOFTWARETHR C:111 , TYR C:114 , ARG C:196 , LYS C:199 , GLY C:200BINDING SITE FOR RESIDUE CL C1001
04AC4SOFTWARETHR D:111 , TYR D:114 , ARG D:196 , LYS D:199 , GLY D:200BINDING SITE FOR RESIDUE CL D1001
05AC5SOFTWAREARG A:20 , TYR A:21 , MET A:299 , ARG A:303 , HOH A:2245 , HOH A:2331 , HOH A:2332 , HIS C:159 , ARG D:85 , HIS D:86 , ASP D:87 , GLN D:241 , ARG D:329 , LEU D:331 , SER D:334 , ALA D:335 , ARG D:338 , HOH D:2073 , HOH D:2270BINDING SITE FOR RESIDUE AMP A1000
06AC6SOFTWAREARG B:20 , TYR B:21 , MET B:299 , ARG B:303 , HOH B:2240 , HOH B:2371 , HOH B:2372 , HOH B:2374 , HOH B:2375 , ARG C:85 , HIS C:86 , ASP C:87 , SER C:112 , GLN C:241 , ARG C:329 , LEU C:331 , SER C:334 , ALA C:335 , ARG C:338 , HOH C:2119 , HOH C:2122 , HOH C:2147 , HIS D:159BINDING SITE FOR RESIDUE AMP B1000
07AC7SOFTWAREHIS A:159 , ARG B:85 , ASP B:87 , GLN B:241 , ARG B:329 , SER B:334 , ALA B:335 , ARG B:338 , ARG C:20 , TYR C:21 , MET C:299 , ARG C:303 , HOH C:2370 , HOH C:2371BINDING SITE FOR RESIDUE AMP C1000
08AC8SOFTWAREARG A:85 , HIS A:86 , ASP A:87 , SER A:112 , GLN A:241 , ARG A:329 , LEU A:331 , SER A:334 , ALA A:335 , ARG A:338 , HOH A:2106 , HOH A:2262 , HIS B:159 , GLU B:481 , ARG D:20 , TYR D:21 , MET D:299 , ARG D:303 , HOH D:2406 , HOH D:2407 , HOH D:2409 , HOH D:2410BINDING SITE FOR RESIDUE AMP D1000
09AC9SOFTWARELYS A:35 , TRP A:39 , ASP A:87 , GLY A:116 , ASP A:120 , SER A:334 , ARG A:338 , HOH A:2261 , HOH A:2333 , HOH A:2334BINDING SITE FOR RESIDUE GOL A1475
10BC1SOFTWAREPHE B:30 , ASP B:120 , ARG B:337 , ARG B:338 , LEU B:341 , ALA B:342 , HOH B:2259 , HOH B:2376 , HOH B:2377BINDING SITE FOR RESIDUE GOL B1482
11BC2SOFTWARELYS C:35 , TRP C:39 , ASP C:87 , GLY C:116 , ASP C:120 , SER C:334 , ARG C:338 , HOH C:2306 , HOH C:2372 , HOH C:2373BINDING SITE FOR RESIDUE GOL C1473
12BC3SOFTWAREGLN B:161 , LYS B:415 , LYS D:276 , TYR D:294 , LYS D:295 , ARG D:296 , HOH D:2411BINDING SITE FOR RESIDUE GOL D1474

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2J91)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2J91)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (27, 107)

Asymmetric/Biological Unit (27, 107)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_016931M26LPUR8_HUMANDisease (ADSLD)  ---A/B/C/DM26L
02UniProtVAR_037883S31NPUR8_HUMANPolymorphism5757921A/B/C/DS31N
03UniProtVAR_007972I72VPUR8_HUMANDisease (ADSLD)  ---A/B/C/DI72V
04UniProtVAR_017079P100APUR8_HUMANDisease (ADSLD)119450942A/C/DP100A
05UniProtVAR_017080Y114HPUR8_HUMANDisease (ADSLD)374259530A/B/C/DY114H
06UniProtVAR_007973R141WPUR8_HUMANDisease (ADSLD)756210458A/B/C/DR141W
07UniProtVAR_037884K147MPUR8_HUMANPolymorphism11089991A/B/C/DK147M
08UniProtVAR_007974R190QPUR8_HUMANDisease (ADSLD)28941471A/B/C/DR190Q
09UniProtVAR_017081R194CPUR8_HUMANDisease (ADSLD)  ---A/B/C/DR194C
10UniProtVAR_007975K246EPUR8_HUMANDisease (ADSLD)119450944A/B/C/DK246E
11UniProtVAR_017082D268NPUR8_HUMANDisease (ADSLD)746501563A/B/C/DD268N
12UniProtVAR_007976R303CPUR8_HUMANDisease (ADSLD)373458753A/B/C/DR303C
13UniProtVAR_017083L311VPUR8_HUMANDisease (ADSLD)  ---A/B/C/DL311V
14UniProtVAR_017084P318LPUR8_HUMANDisease (ADSLD)202064195A/B/C/DP318L
15UniProtVAR_017085V364MPUR8_HUMANDisease (ADSLD)370851726A/B/C/DV364M
16UniProtVAR_017086R374WPUR8_HUMANDisease (ADSLD)376533026A/B/C/DR374W
17UniProtVAR_007977S395RPUR8_HUMANDisease (ADSLD)  ---A/B/C/DS395R
18UniProtVAR_017087R396CPUR8_HUMANDisease (ADSLD)755492501A/B/C/DR396C
19UniProtVAR_017088R396HPUR8_HUMANDisease (ADSLD)763542069A/B/C/DR396H
20UniProtVAR_017089D422YPUR8_HUMANDisease (ADSLD)119450943A/B/C/DD422Y
21UniProtVAR_017090L423VPUR8_HUMANDisease (ADSLD)  ---A/B/C/DL423V
22UniProtVAR_007978R426HPUR8_HUMANDisease (ADSLD)119450941A/B/C/DR426H
23UniProtVAR_017091D430NPUR8_HUMANDisease (ADSLD)554254383A/B/C/DD430N
24UniProtVAR_000680S438PPUR8_HUMANDisease (ADSLD)119450940A/B/C/DS438P
25UniProtVAR_017092S447PPUR8_HUMANDisease (ADSLD)777821034A/B/C/DS447P
26UniProtVAR_016932T450SPUR8_HUMANDisease (ADSLD)372895468A/B/C/DT450S
27UniProtVAR_017093R452PPUR8_HUMANDisease (ADSLD)  ---A/B/C/DR452P
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FUMARATE_LYASESPS00163 Fumarate lyases signature.PUR8_HUMAN288-297
 
 
 		  4A:294-297
B:292-297
C:294-297
D:293-297

(-) Exons   (0, 0)

(no "Exon" information available for 2J91)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:457
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:470
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES 474
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...-----------....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhh--..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j91 A   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF-----------YKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMV--GGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES 474
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384     | 394       404       414       424       434       444       454       464       474
                                                                                                                                                                                                                                                                                                               282         294                                                                                             390  |                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                              393                                                                                 


Chain B from PDB  Type:PROTEIN  Length:463
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:477
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVMKVKAE 481
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...---------......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.---.... Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V-----------------------------------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P----------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j91 B   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCC--AAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF---------MPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES---VKAE 481
                                    14        24        34        44        54        64        74        84        94    |  104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474   |   
                                                                                                                         99  |                                                                                                                                                                                 282       292                                                                                                                                                                                   474 478   
                                                                                                                           102                                                                                                                                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:456
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:468
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464        
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPY 472
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..------------....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H---------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2j91 C   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEP------------YKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPY 472
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274      |  -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464        
                                                                                                                                                                                                                                                                                                              281          294                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:456
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:469
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464         
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYE 473
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....---hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...----------.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P--------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H----------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j91 D   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPIT---IREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF----------PYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYE 473
                                    14        24        34        44        54   |   |64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464         
                                                                                58  62                                                                                                                                                                                                                         282        293
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2J91)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2J91)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2J91)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (PUR8_HUMAN | P30566)
molecular function
    GO:0070626    (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity    Catalysis of the reaction: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide.
    GO:0004018    N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity    Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0044208    'de novo' AMP biosynthetic process    The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).
    GO:0006189    'de novo' IMP biosynthetic process    The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
    GO:0006167    AMP biosynthetic process    The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0006164    purine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
    GO:0009168    purine ribonucleoside monophosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar.
    GO:0009152    purine ribonucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  2j91
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  PUR8_HUMAN | P30566
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  103050
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PUR8_HUMAN | P30566: 2vd6 4ffx 4flc

(-) Related Entries Specified in the PDB File

2j84 CRYSTAL STRUCTURE OF HUMAN ADENYLOSUCCINATE LYASE IN COMPLEX WITH AMP