2VD6 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   HUMAN ADENYLOSUCCINATE LYASE IN COMPLEX WITH ITS SUBSTRATE N6-(1,2-DICARBOXYETHYL)-AMP, AND ITS PRODUCTS AMP AND FUMARATE.

Authors :   P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hamma B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Ka T. Kotenyova, L. Lehtio, M. Nilsson, T. Nyman, D. Ogg, C. Persson, J. Sa M. Sundstrom, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weig M. Welin, P. Nordlund, Structural Genomics Consortium (Sgc)

Date :   30 Sep 07 (Deposition) - 23 Oct 07 (Release) - 18 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)

Keywords :   Purine Biosynthesis, Lyase, Epilepsy, Purine Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, M. Nilsson, T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, P. Nordlund
Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1, 2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate.
To Be Published
PubMed: search

Molecule 1 - ADENYLOSUCCINATE LYASE
	Chains	:	A, B, C, D
	EC Number	:	4.3.2.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-BSA4
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 1-481
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	THE CONSTRUCT CONTAINS A HEXAHISTIDINE TAIL AND A LINKER SEQUENCE IN THE N-TERMINUS ( MHHHHHHSSGVDLGTENLYFQS)
	Other Details - Source	:	MAMMALIAN GENE COLLECTION (MGC)
	Synonym	:	ADENYLOSUCCINASE, ASL, ASASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 18)

No.	Name	Count	Type	Full Name
1	2SA	2	Ligand/Ion	2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID
2	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	CL	7	Ligand/Ion	CHLORIDE ION
4	FUM	2	Ligand/Ion	FUMARIC ACID
5	GOL	5	Ligand/Ion	GLYCEROL

Biological Unit 1 (4, 11)

No.	Name	Count	Type	Full Name
1	2SA	2	Ligand/Ion	2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID
2	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	FUM	2	Ligand/Ion	FUMARIC ACID
5	GOL	5	Ligand/Ion	GLYCEROL

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:85 , HIS A:86 , ASP A:87 , SER A:112 , GLN A:241 , ARG A:329 , LEU A:331 , SER A:334 , ALA A:335 , ARG A:338 , FUM A:1001 , CL A:2001 , HOH A:2054 , HOH A:2251 , HOH A:2252 , HOH A:2253 , HIS B:159 , ARG D:20 , TYR D:21 , MET D:299 , ARG D:303	BINDING SITE FOR RESIDUE AMP A1000
02	AC2	SOFTWARE	HIS A:86 , MET A:89 , THR A:111 , SER A:112 , GLN A:241 , AMP A:1000 , HOH A:2255 , HOH A:2256 , THR B:158 , HIS B:159 , LYS D:295	BINDING SITE FOR RESIDUE FUM A1001
03	AC3	SOFTWARE	LYS A:35 , TRP A:39 , ASP A:87 , GLY A:116 , ASP A:120 , SER A:334 , ARG A:338 , HOH A:2161 , HOH A:2257	BINDING SITE FOR RESIDUE GOL A1003
04	AC4	SOFTWARE	AMP A:1000 , ASN D:297 , MET D:299	BINDING SITE FOR RESIDUE CL A2001
05	AC5	SOFTWARE	THR A:111 , TYR A:114 , ARG A:196 , LYS A:199 , GLY A:200	BINDING SITE FOR RESIDUE CL A2002
06	AC6	SOFTWARE	THR A:158 , HIS A:159 , ARG B:85 , HIS B:86 , ASP B:87 , THR B:111 , SER B:112 , GLN B:241 , ARG B:329 , SER B:334 , ALA B:335 , ARG B:338 , CL B:2001 , HOH B:2038 , HOH B:2051 , HOH B:2130 , HOH B:2161 , HOH B:2163 , HOH B:2165 , HOH B:2166 , ARG C:20 , TYR C:21 , LYS C:295 , MET C:299 , ARG C:303	BINDING SITE FOR RESIDUE 2SA B1002
07	AC7	SOFTWARE	LYS B:35 , ASP B:87 , GLY B:116 , ASP B:120 , SER B:334 , ARG B:338 , HOH B:2168	BINDING SITE FOR RESIDUE GOL B1003
08	AC8	SOFTWARE	ASP B:120 , ARG B:337 , ARG B:338 , LEU B:341 , ALA B:342 , HOH B:2131	BINDING SITE FOR RESIDUE GOL B1004
09	AC9	SOFTWARE	2SA B:1002 , HOH B:2166 , ASN C:297	BINDING SITE FOR RESIDUE CL B2001
10	BC1	SOFTWARE	THR B:111 , TYR B:114 , ARG B:196 , LYS B:199 , GLY B:200	BINDING SITE FOR RESIDUE CL B2002
11	BC2	SOFTWARE	ARG B:20 , TYR B:21 , MET B:299 , ARG B:303 , ARG C:85 , HIS C:86 , ASP C:87 , SER C:112 , GLN C:241 , ARG C:329 , LEU C:331 , SER C:334 , ALA C:335 , ARG C:338 , FUM C:1001 , HOH C:2241 , HOH C:2242 , HOH C:2243 , HIS D:159	BINDING SITE FOR RESIDUE AMP C1000
12	BC3	SOFTWARE	LYS B:295 , ASN B:297 , HIS C:86 , THR C:111 , SER C:112 , GLN C:241 , AMP C:1000 , THR D:158 , HIS D:159	BINDING SITE FOR RESIDUE FUM C1001
13	BC4	SOFTWARE	LYS C:35 , TRP C:39 , ASP C:87 , GLY C:116 , ASP C:120 , SER C:334 , ARG C:338 , HOH C:2167 , HOH C:2245	BINDING SITE FOR RESIDUE GOL C1003
14	BC5	SOFTWARE	TYR C:114 , ARG C:196 , LYS C:199 , GLY C:200	BINDING SITE FOR RESIDUE CL C2002
15	BC6	SOFTWARE	ARG A:20 , TYR A:21 , LYS A:295 , MET A:299 , ARG A:303 , THR C:158 , HIS C:159 , ARG D:85 , HIS D:86 , ASP D:87 , THR D:111 , SER D:112 , GLN D:241 , ARG D:329 , SER D:334 , ALA D:335 , ARG D:338 , CL D:2001 , HOH D:2067 , HOH D:2087 , HOH D:2244 , HOH D:2245 , HOH D:2246 , HOH D:2247 , HOH D:2249	BINDING SITE FOR RESIDUE 2SA D1002
16	BC7	SOFTWARE	LYS D:35 , TRP D:39 , ASP D:87 , GLY D:116 , ASP D:120 , SER D:334 , ARG D:338 , HOH D:2212 , HOH D:2213 , HOH D:2250	BINDING SITE FOR RESIDUE GOL D1003
17	BC8	SOFTWARE	ASN A:297 , MET A:299 , 2SA D:1002 , HOH D:2026	BINDING SITE FOR RESIDUE CL D2001
18	BC9	SOFTWARE	THR D:111 , TYR D:114 , ARG D:196 , LYS D:199 , GLY D:200	BINDING SITE FOR RESIDUE CL D2002

(no "SS Bond" information available for 2VD6)

(no "Cis Peptide Bond" information available for 2VD6)

Asymmetric Unit (27, 108)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016931	M	26	L	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	M	26	L
02	UniProt	VAR_037883	S	31	N	PUR8_HUMAN	Polymorphism	5757921	A/B/C/D	S	31	N
03	UniProt	VAR_007972	I	72	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	I	72	V
04	UniProt	VAR_017079	P	100	A	PUR8_HUMAN	Disease (ADSLD)	119450942	A/B/C/D	P	100	A
05	UniProt	VAR_017080	Y	114	H	PUR8_HUMAN	Disease (ADSLD)	374259530	A/B/C/D	Y	114	H
06	UniProt	VAR_007973	R	141	W	PUR8_HUMAN	Disease (ADSLD)	756210458	A/B/C/D	R	141	W
07	UniProt	VAR_037884	K	147	M	PUR8_HUMAN	Polymorphism	11089991	A/B/C/D	K	147	M
08	UniProt	VAR_007974	R	190	Q	PUR8_HUMAN	Disease (ADSLD)	28941471	A/B/C/D	R	190	Q
09	UniProt	VAR_017081	R	194	C	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	R	194	C
10	UniProt	VAR_007975	K	246	E	PUR8_HUMAN	Disease (ADSLD)	119450944	A/B/C/D	K	246	E
11	UniProt	VAR_017082	D	268	N	PUR8_HUMAN	Disease (ADSLD)	746501563	A/B/C/D	D	268	N
12	UniProt	VAR_007976	R	303	C	PUR8_HUMAN	Disease (ADSLD)	373458753	A/B/C/D	R	303	C
13	UniProt	VAR_017083	L	311	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	L	311	V
14	UniProt	VAR_017084	P	318	L	PUR8_HUMAN	Disease (ADSLD)	202064195	A/B/C/D	P	318	L
15	UniProt	VAR_017085	V	364	M	PUR8_HUMAN	Disease (ADSLD)	370851726	A/B/C/D	V	364	M
16	UniProt	VAR_017086	R	374	W	PUR8_HUMAN	Disease (ADSLD)	376533026	A/B/C/D	R	374	W
17	UniProt	VAR_007977	S	395	R	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	S	395	R
18	UniProt	VAR_017087	R	396	C	PUR8_HUMAN	Disease (ADSLD)	755492501	A/B/C/D	R	396	C
19	UniProt	VAR_017088	R	396	H	PUR8_HUMAN	Disease (ADSLD)	763542069	A/B/C/D	R	396	H
20	UniProt	VAR_017089	D	422	Y	PUR8_HUMAN	Disease (ADSLD)	119450943	A/B/C/D	D	422	Y
21	UniProt	VAR_017090	L	423	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	L	423	V
22	UniProt	VAR_007978	R	426	H	PUR8_HUMAN	Disease (ADSLD)	119450941	A/B/C/D	R	426	H
23	UniProt	VAR_017091	D	430	N	PUR8_HUMAN	Disease (ADSLD)	554254383	A/B/C/D	D	430	N
24	UniProt	VAR_000680	S	438	P	PUR8_HUMAN	Disease (ADSLD)	119450940	A/B/C/D	S	438	P
25	UniProt	VAR_017092	S	447	P	PUR8_HUMAN	Disease (ADSLD)	777821034	A/B/C/D	S	447	P
26	UniProt	VAR_016932	T	450	S	PUR8_HUMAN	Disease (ADSLD)	372895468	A/B/C/D	T	450	S
27	UniProt	VAR_017093	R	452	P	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	R	452	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (27, 108)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016931	M	26	L	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	M	26	L
02	UniProt	VAR_037883	S	31	N	PUR8_HUMAN	Polymorphism	5757921	A/B/C/D	S	31	N
03	UniProt	VAR_007972	I	72	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	I	72	V
04	UniProt	VAR_017079	P	100	A	PUR8_HUMAN	Disease (ADSLD)	119450942	A/B/C/D	P	100	A
05	UniProt	VAR_017080	Y	114	H	PUR8_HUMAN	Disease (ADSLD)	374259530	A/B/C/D	Y	114	H
06	UniProt	VAR_007973	R	141	W	PUR8_HUMAN	Disease (ADSLD)	756210458	A/B/C/D	R	141	W
07	UniProt	VAR_037884	K	147	M	PUR8_HUMAN	Polymorphism	11089991	A/B/C/D	K	147	M
08	UniProt	VAR_007974	R	190	Q	PUR8_HUMAN	Disease (ADSLD)	28941471	A/B/C/D	R	190	Q
09	UniProt	VAR_017081	R	194	C	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	R	194	C
10	UniProt	VAR_007975	K	246	E	PUR8_HUMAN	Disease (ADSLD)	119450944	A/B/C/D	K	246	E
11	UniProt	VAR_017082	D	268	N	PUR8_HUMAN	Disease (ADSLD)	746501563	A/B/C/D	D	268	N
12	UniProt	VAR_007976	R	303	C	PUR8_HUMAN	Disease (ADSLD)	373458753	A/B/C/D	R	303	C
13	UniProt	VAR_017083	L	311	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	L	311	V
14	UniProt	VAR_017084	P	318	L	PUR8_HUMAN	Disease (ADSLD)	202064195	A/B/C/D	P	318	L
15	UniProt	VAR_017085	V	364	M	PUR8_HUMAN	Disease (ADSLD)	370851726	A/B/C/D	V	364	M
16	UniProt	VAR_017086	R	374	W	PUR8_HUMAN	Disease (ADSLD)	376533026	A/B/C/D	R	374	W
17	UniProt	VAR_007977	S	395	R	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	S	395	R
18	UniProt	VAR_017087	R	396	C	PUR8_HUMAN	Disease (ADSLD)	755492501	A/B/C/D	R	396	C
19	UniProt	VAR_017088	R	396	H	PUR8_HUMAN	Disease (ADSLD)	763542069	A/B/C/D	R	396	H
20	UniProt	VAR_017089	D	422	Y	PUR8_HUMAN	Disease (ADSLD)	119450943	A/B/C/D	D	422	Y
21	UniProt	VAR_017090	L	423	V	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	L	423	V
22	UniProt	VAR_007978	R	426	H	PUR8_HUMAN	Disease (ADSLD)	119450941	A/B/C/D	R	426	H
23	UniProt	VAR_017091	D	430	N	PUR8_HUMAN	Disease (ADSLD)	554254383	A/B/C/D	D	430	N
24	UniProt	VAR_000680	S	438	P	PUR8_HUMAN	Disease (ADSLD)	119450940	A/B/C/D	S	438	P
25	UniProt	VAR_017092	S	447	P	PUR8_HUMAN	Disease (ADSLD)	777821034	A/B/C/D	S	447	P
26	UniProt	VAR_016932	T	450	S	PUR8_HUMAN	Disease (ADSLD)	372895468	A/B/C/D	T	450	S
27	UniProt	VAR_017093	R	452	P	PUR8_HUMAN	Disease (ADSLD)	---	A/B/C/D	R	452	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FUMARATE_LYASES	PS00163	Fumarate lyases signature.	PUR8_HUMAN	288-297	4	A:293-297 B:294-297 C:294-297 D:293-297

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FUMARATE_LYASES	PS00163	Fumarate lyases signature.	PUR8_HUMAN	288-297	4	A:293-297 B:294-297 C:294-297 D:293-297

(no "Exon" information available for 2VD6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:461
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:470
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES 474
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....---------.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P---------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vd6 A   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFE---------PYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES 474
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274        |-       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
                                                                                                                                                                                                                                                                                                                283       293

Chain B from PDB  Type:PROTEIN  Length:461
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:472
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVM 476
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...-----------....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vd6 B   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF-----------YKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVM 476
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
                                                                                                                                                                                                                                                                                                               282         294

Chain C from PDB  Type:PROTEIN  Length:457
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:468
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464        
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPY 472
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...-----------....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H---------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vd6 C   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF-----------YKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPY 472
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464        
                                                                                                                                                                                                                                                                                                               282         294

Chain D from PDB  Type:PROTEIN  Length:462
 aligned with PUR8_HUMAN | P30566 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:472
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
           PUR8_HUMAN     5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVM 476
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------Lyase_1-2vd6D05 D:28-313                                                                                                                                                                                                                                                                      ---------------------------------------------------------------ADSL_C-2vd6D01 D:377-461                                                             --------------- Pfam domains (1)
           Pfam domains (2) -----------------------Lyase_1-2vd6D06 D:28-313                                                                                                                                                                                                                                                                      ---------------------------------------------------------------ADSL_C-2vd6D02 D:377-461                                                             --------------- Pfam domains (2)
           Pfam domains (3) -----------------------Lyase_1-2vd6D07 D:28-313                                                                                                                                                                                                                                                                      ---------------------------------------------------------------ADSL_C-2vd6D03 D:377-461                                                             --------------- Pfam domains (3)
           Pfam domains (4) -----------------------Lyase_1-2vd6D08 D:28-313                                                                                                                                                                                                                                                                      ---------------------------------------------------------------ADSL_C-2vd6D04 D:377-461                                                             --------------- Pfam domains (4)
         Sec.struct. author ..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...----------.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------L----N----------------------------------------V---------------------------A-------------H--------------------------W-----M------------------------------------------Q---C---------------------------------------------------E---------------------N----------------------------------C-------V------L---------------------------------------------M---------W--------------------RC-------------------------YV--H---N-------P--------P--S-P------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FUMARATE_L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vd6 D   5 GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPF----------PYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVM 476
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       | -       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474  
                                                                                                                                                                                                                                                                                                               282        293

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2VD6)

(no "CATH Domain" information available for 2VD6)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: ADSL_C] (6)

Family: ADSL_C (6)

Homo sapiens (Human) (1)

1a	ADSL_C-2vd6D01	D:377-461
1b	ADSL_C-2vd6D02	D:377-461
1c	ADSL_C-2vd6D03	D:377-461
1d	ADSL_C-2vd6D04	D:377-461

Clan: no clan defined [family: Lyase_1] (27)

Family: Lyase_1 (27)

Homo sapiens (Human) (2)

2a	Lyase_1-2vd6D05	D:28-313
2b	Lyase_1-2vd6D06	D:28-313
2c	Lyase_1-2vd6D07	D:28-313
2d	Lyase_1-2vd6D08	D:28-313

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PUR8_HUMAN | P30566)

molecular function
	GO:0070626	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	Catalysis of the reaction: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide.
	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0044208	'de novo' AMP biosynthetic process	The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0006167	AMP biosynthetic process	The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar.
	GO:0009152	purine ribonucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2vd6)

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	2vd6
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	PUR8_HUMAN \| P30566
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	PUR8_HUMAN \| P30566	:	2j91 4ffx 4flc

2j91	CRYSTAL STRUCTURE OF HUMAN ADENYLOSUCCINATE LYASE IN COMPLEX WITH AMP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (27, 108)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (2, 8)

Gene Ontology (12, 12)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File