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2J91
Asym. Unit
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Asym.Unit (333 KB)
Biol.Unit 1 (325 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN ADENYLOSUCCINATE LYASE IN COMPLEX WITH AMP
Authors
:
P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hamma B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, I. Johansson, T. Ka U. Kosinska, T. Kotenyova, A. Magnusdottir, M. E. Nilsson, P. Nilsson T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Uppsten, A. G. Thorsell, S. Van Den Berg, K. Wallden, J. Weigelt, P. Nordlund
Date
:
01 Nov 06 (Deposition) - 07 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Disease Mutation, Adenylosuccinase, Succino Amp-Lyase, Purine Biosynthesis, Adenylosuccinate Lyase, Adenylosuccinase Deficiency, Amp, Adsl, Lyase, Saicar, Purine, S-Amp, Epilepsy
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Stenmark, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, A. Edwards, U. B. Ericsson, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg Schiavone, M. Hogbom, I. Johansson, T. Karlberg, U. Kosinska, T. Kotenyova, A. Magnusdottir, M. E. Nilsson, P. Nilsson-Ehle, T. Nyman, D. Ogg, C. Persson, J. Sagemark, M. Sundstrom, J. Uppenberg, M. Uppsten, A. G. Thorsell, S. Van Den Berg, K. Wallden, J. Weigelt, P. Nordlund
Crystal Structure Of Human Adenylosuccinate Lyase
To Be Published
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
4
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
GOL
4
Ligand/Ion
GLYCEROL
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:111 , TYR A:114 , ARG A:196 , LYS A:199 , GLY A:200
BINDING SITE FOR RESIDUE CL A1001
02
AC2
SOFTWARE
THR B:111 , ARG B:196 , LYS B:199 , GLY B:200
BINDING SITE FOR RESIDUE CL B1001
03
AC3
SOFTWARE
THR C:111 , TYR C:114 , ARG C:196 , LYS C:199 , GLY C:200
BINDING SITE FOR RESIDUE CL C1001
04
AC4
SOFTWARE
THR D:111 , TYR D:114 , ARG D:196 , LYS D:199 , GLY D:200
BINDING SITE FOR RESIDUE CL D1001
05
AC5
SOFTWARE
ARG A:20 , TYR A:21 , MET A:299 , ARG A:303 , HOH A:2245 , HOH A:2331 , HOH A:2332 , HIS C:159 , ARG D:85 , HIS D:86 , ASP D:87 , GLN D:241 , ARG D:329 , LEU D:331 , SER D:334 , ALA D:335 , ARG D:338 , HOH D:2073 , HOH D:2270
BINDING SITE FOR RESIDUE AMP A1000
06
AC6
SOFTWARE
ARG B:20 , TYR B:21 , MET B:299 , ARG B:303 , HOH B:2240 , HOH B:2371 , HOH B:2372 , HOH B:2374 , HOH B:2375 , ARG C:85 , HIS C:86 , ASP C:87 , SER C:112 , GLN C:241 , ARG C:329 , LEU C:331 , SER C:334 , ALA C:335 , ARG C:338 , HOH C:2119 , HOH C:2122 , HOH C:2147 , HIS D:159
BINDING SITE FOR RESIDUE AMP B1000
07
AC7
SOFTWARE
HIS A:159 , ARG B:85 , ASP B:87 , GLN B:241 , ARG B:329 , SER B:334 , ALA B:335 , ARG B:338 , ARG C:20 , TYR C:21 , MET C:299 , ARG C:303 , HOH C:2370 , HOH C:2371
BINDING SITE FOR RESIDUE AMP C1000
08
AC8
SOFTWARE
ARG A:85 , HIS A:86 , ASP A:87 , SER A:112 , GLN A:241 , ARG A:329 , LEU A:331 , SER A:334 , ALA A:335 , ARG A:338 , HOH A:2106 , HOH A:2262 , HIS B:159 , GLU B:481 , ARG D:20 , TYR D:21 , MET D:299 , ARG D:303 , HOH D:2406 , HOH D:2407 , HOH D:2409 , HOH D:2410
BINDING SITE FOR RESIDUE AMP D1000
09
AC9
SOFTWARE
LYS A:35 , TRP A:39 , ASP A:87 , GLY A:116 , ASP A:120 , SER A:334 , ARG A:338 , HOH A:2261 , HOH A:2333 , HOH A:2334
BINDING SITE FOR RESIDUE GOL A1475
10
BC1
SOFTWARE
PHE B:30 , ASP B:120 , ARG B:337 , ARG B:338 , LEU B:341 , ALA B:342 , HOH B:2259 , HOH B:2376 , HOH B:2377
BINDING SITE FOR RESIDUE GOL B1482
11
BC2
SOFTWARE
LYS C:35 , TRP C:39 , ASP C:87 , GLY C:116 , ASP C:120 , SER C:334 , ARG C:338 , HOH C:2306 , HOH C:2372 , HOH C:2373
BINDING SITE FOR RESIDUE GOL C1473
12
BC3
SOFTWARE
GLN B:161 , LYS B:415 , LYS D:276 , TYR D:294 , LYS D:295 , ARG D:296 , HOH D:2411
BINDING SITE FOR RESIDUE GOL D1474
[
close Site info
]
SAPs(SNPs)/Variants
(27, 107)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016931 (M26L, chain A/B/C/D, )
02: VAR_037883 (S31N, chain A/B/C/D, )
03: VAR_007972 (I72V, chain A/B/C/D, )
04: VAR_017079 (P100A, chain A/C/D, )
05: VAR_017080 (Y114H, chain A/B/C/D, )
06: VAR_007973 (R141W, chain A/B/C/D, )
07: VAR_037884 (K147M, chain A/B/C/D, )
08: VAR_007974 (R190Q, chain A/B/C/D, )
09: VAR_017081 (R194C, chain A/B/C/D, )
10: VAR_007975 (K246E, chain A/B/C/D, )
11: VAR_017082 (D268N, chain A/B/C/D, )
12: VAR_007976 (R303C, chain A/B/C/D, )
13: VAR_017083 (L311V, chain A/B/C/D, )
14: VAR_017084 (P318L, chain A/B/C/D, )
15: VAR_017085 (V364M, chain A/B/C/D, )
16: VAR_017086 (R374W, chain A/B/C/D, )
17: VAR_007977 (S395R, chain A/B/C/D, )
18: VAR_017087 (R396C, chain A/B/C/D, )
19: VAR_017088 (R396H, chain A/B/C/D, )
20: VAR_017089 (D422Y, chain A/B/C/D, )
21: VAR_017090 (L423V, chain A/B/C/D, )
22: VAR_007978 (R426H, chain A/B/C/D, )
23: VAR_017091 (D430N, chain A/B/C/D, )
24: VAR_000680 (S438P, chain A/B/C/D, )
25: VAR_017092 (S447P, chain A/B/C/D, )
26: VAR_016932 (T450S, chain A/B/C/D, )
27: VAR_017093 (R452P, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016931
M
26
L
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
M
26
L
02
UniProt
VAR_037883
S
31
N
PUR8_HUMAN
Polymorphism
5757921
A/B/C/D
S
31
N
03
UniProt
VAR_007972
I
72
V
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
I
72
V
04
UniProt
VAR_017079
P
100
A
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/C/D
P
100
A
05
UniProt
VAR_017080
Y
114
H
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
Y
114
H
06
UniProt
VAR_007973
R
141
W
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
141
W
07
UniProt
VAR_037884
K
147
M
PUR8_HUMAN
Polymorphism
11089991
A/B/C/D
K
147
M
08
UniProt
VAR_007974
R
190
Q
PUR8_HUMAN
Disease (ADSL deficiency)
28941471
A/B/C/D
R
190
Q
09
UniProt
VAR_017081
R
194
C
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
194
C
10
UniProt
VAR_007975
K
246
E
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
K
246
E
11
UniProt
VAR_017082
D
268
N
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
D
268
N
12
UniProt
VAR_007976
R
303
C
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
303
C
13
UniProt
VAR_017083
L
311
V
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
L
311
V
14
UniProt
VAR_017084
P
318
L
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
P
318
L
15
UniProt
VAR_017085
V
364
M
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
V
364
M
16
UniProt
VAR_017086
R
374
W
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
374
W
17
UniProt
VAR_007977
S
395
R
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
S
395
R
18
UniProt
VAR_017087
R
396
C
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
396
C
19
UniProt
VAR_017088
R
396
H
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
396
H
20
UniProt
VAR_017089
D
422
Y
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
D
422
Y
21
UniProt
VAR_017090
L
423
V
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
L
423
V
22
UniProt
VAR_007978
R
426
H
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
426
H
23
UniProt
VAR_017091
D
430
N
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
D
430
N
24
UniProt
VAR_000680
S
438
P
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
S
438
P
25
UniProt
VAR_017092
S
447
P
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
S
447
P
26
UniProt
VAR_016932
T
450
S
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
T
450
S
27
UniProt
VAR_017093
R
452
P
PUR8_HUMAN
Disease (ADSL deficiency)
---
A/B/C/D
R
452
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FUMARATE_LYASES (A:294-297,B:292-297,C:294-297,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FUMARATE_LYASES
PS00163
Fumarate lyases signature.
PUR8_HUMAN
288-297
4
A:294-297
B:292-297
C:294-297
D:293-297
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
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(currently selected atoms:
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)
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Asym.Unit (333 KB)
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