2J3W - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF THE BET3-TRS31-SEDLIN COMPLEX.

Authors :   Y. -G. Kim, B. -H. Oh

Date :   23 Aug 06 (Deposition) - 27 Nov 06 (Release) - 07 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D,F  (1x)
Biol. Unit 2: A,B,E  (1x)

Keywords :   Multisubunit Tethering Factor, Trapp, Palmitate, Transport, Lipoprotein, Er-Golgi Transport, Endoplasmic Reticulum, Transcription, Golgi Apparatus, Vesicle Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. -G. Kim, S. Raunser, C. Munger, J. Wagner, Y. -L. Song, M. Cygler, T. Walz, B. -H. Oh, M. Sacher
The Architecture Of The Multisubunit Trapp I Complex Suggests A Model For Vesicle Tethering.
Cell(Cambridge, Mass. ) V. 127 817 2006
PubMed-ID: 17110339 | Reference-DOI: 10.1016/J.CELL.2006.09.029

Molecule 1 - TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN 2
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEXHTA, PET15B, PET30A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	SEDLIN

Molecule 2 - ZGC 92866
	Chains	:	B, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEXHTA, PET15B, PET30A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Common	:	ZEBRAFISH
	Organism Scientific	:	BRACHYDANIO RERIO
	Organism Taxid	:	7955

Molecule 3 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
	Chains	:	D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEXHTA, PET15B, PET30A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	BET3 HOMOLOG

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:			C	D		F
Biological Unit 2 (1x)	:	A	B			E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PLM	2	Ligand/Ion	PALMITIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	PLM	1	Ligand/Ion	PALMITIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	PLM	1	Ligand/Ion	PALMITIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE D:59 , CYS D:68 , ALA D:82 , PHE D:83 , LEU D:87	BINDING SITE FOR RESIDUE PLM D1068
2	AC2	SOFTWARE	PHE E:59 , CYS E:68 , TYR E:86	BINDING SITE FOR RESIDUE PLM E1068

(no "SS Bond" information available for 2J3W)

(no "Cis Peptide Bond" information available for 2J3W)

(no "SAP(SNP)/Variant" information available for 2J3W)

(no "PROSITE Motif" information available for 2J3W)

Asymmetric Unit (2, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENSDART00000038574	1a	ENSDARE00000385444	chr1:46134420-46134472	53	Q6DGL5_DANRE	-	0	0	-	-
1.2	ENSDART00000038574	2	ENSDARE00000227628	chr1:46134735-46135061	327	Q6DGL5_DANRE	1-90	90	2	B:21-90 F:22-90	70 69
1.3b	ENSDART00000038574	3b	ENSDARE00000227616	chr1:46139301-46140137	837	Q6DGL5_DANRE	91-188	98	2	B:91-188 F:91-188	98 98

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with TPPC2_MOUSE | Q9CQP2 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:142
                              1                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138  
          TPPC2_MOUSE     - --MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 140
               SCOP domains d2j3wa_ A: Sedlin (SEDL)                                                                                                                       SCOP domains
               CATH domains 2j3wA00 A:-1-140  [code=3.30.450.70, no name defined]                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeee.....eeeeee...hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j3w A  -1 LEMSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 140
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138

Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q6DGL5_DANRE | Q6DGL5 from UniProtKB/TrEMBL  Length:188

    Alignment length:168
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q6DGL5_DANRE    21 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDKALDGR 188
               SCOP domains d2j3wb1 B:21-188 TRAPPC5, similar to trafficking protein particle complex 5                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....eeeee..eeeeeeeee..hhhhhh.........hhhhhhhhhhhhhhhhhh...eeeeeee...eeeeeeehhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.2  PDB: B:21-90 UniProt: 1-90 [INCOMPLETE]                     Exon 1.3b  PDB: B:91-188 UniProt: 91-188                                                           Transcript 1
                 2j3w B  21 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDKALDGR 188
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain C from PDB  Type:PROTEIN  Length:135
 aligned with TPPC2_MOUSE | Q9CQP2 from UniProtKB/Swiss-Prot  Length:140

    Alignment length:142
                              1                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138  
          TPPC2_MOUSE     - --MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 140
               SCOP domains d2j3wc_ C: Sedlin (SEDL)                                                                                                                       SCOP domains
               CATH domains 2j3wC00 C:-1-140  [code=3.30.       450.70, no name defined]                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeeeee.....-------hhhhhhhhhhhhhhhhhhhhh....eeeeeeee..eeeeeee.....eeeeee...hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j3w C  -1 LEMSGSFYFVIVGHHDNPVFEMEFLPPGK-------RHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 140
                                     8        18        |-      | 38        48        58        68        78        88        98       108       118       128       138  
                                                       27      35

Chain D from PDB  Type:PROTEIN  Length:158
 aligned with TPPC3_MOUSE | O55013 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:161
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 
          TPPC3_MOUSE    13 KMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 173
               SCOP domains d2j3wd_ D: automated matches                                                                                                                                      SCOP domains
               CATH domains 2j3wD00 D:13-173 Trafficking protein particle comple   x subunit 3                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...---..hhhhhhhhhhhhhhhhhh....eee.......eeeeee..hhhhh....hhhhh.....hhhhhhhhhhhhh..eeeeeeeeehhhhh...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j3w D  13 KMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSN---CHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 173
                                    22        32        42        52        62 |   |  72        82        92       102       112       122       132       142       152       162       172 
                                                                              64  68

Chain E from PDB  Type:PROTEIN  Length:159
 aligned with TPPC3_MOUSE | O55013 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:162
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171  
          TPPC3_MOUSE    12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 173
               SCOP domains d2j3we_ E: automated matches                                                                                                                                       SCOP domains
               CATH domains 2j3wE00 E:12-173 Trafficking protein particle complex    subunit 3                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..---..hhhhhhhhhhhhhhhhhh....eee.......eeeeee..hhhhh....hhhhh.....hhhhhhhhhhhhh..eeeeeeeeehhhhh...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2j3w E  12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSN---CHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 173
                                    21        31        41        51        61  |   | 71        81        91       101       111       121       131       141       151       161       171  
                                                                               64  68

Chain F from PDB  Type:PROTEIN  Length:167
 aligned with Q6DGL5_DANRE | Q6DGL5 from UniProtKB/TrEMBL  Length:188

    Alignment length:167
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       
         Q6DGL5_DANRE    22 TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDKALDGR 188
               SCOP domains d2j3wf_ F: TRAPPC5, similar to trafficking protein particle complex 5                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....eeee......eeeeee..hhhhhh.........hhhhhhhhhhhhhhhhhh...eeeeeee...eeeeeeehhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: F:22-90 UniProt: 1-90 [INCOMPLETE]                    Exon 1.3b  PDB: F:91-188 UniProt: 91-188                                                           Transcript 1
                 2j3w F  22 TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDKALDGR 188
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Beta-Lactamase (202)

Homologous Superfamily: [code=3.30.450.70, no name defined] (2)

Mouse (Mus musculus) (2)

1a	2j3wA00	A:-1-140
1b	2j3wC00	C:-1-140

Topology: Muramoyl-pentapeptide Carboxypeptidase; domain 2 (24)

Homologous Superfamily: Trafficking protein particle complex subunit 3 (11)

Mouse (Mus musculus) (5)

2a	2j3wD00	D:13-173
2b	2j3wE00	E:12-173

(no "Pfam Domain" information available for 2J3W)

Asymmetric Unit(hide GO term definitions)

Chain A,C (TPPC2_MOUSE | Q9CQP2)

molecular function
	GO:0044325	ion channel binding	Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008134	transcription factor binding	Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
	GO:0006888	ER to Golgi vesicle-mediated transport	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0001501	skeletal system development	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016192	vesicle-mediated transport	A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0030008	TRAPP complex	A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.

Chain B,F (Q6DGL5_DANRE | Q6DGL5)

cellular component
	GO:0005575		cellular_component		The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Chain D,E (TPPC3_MOUSE | O55013)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006888	ER to Golgi vesicle-mediated transport	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016192	vesicle-mediated transport	A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0030008	TRAPP complex	A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

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	2j3w
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	TPPC2_MOUSE \| Q9CQP2
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	Q6DGL5_DANRE \| Q6DGL5
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	TPPC2_MOUSE \| Q9CQP2
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	TPPC3_MOUSE \| O55013
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UniProtKB/Swiss-Prot
	TPPC2_MOUSE \| Q9CQP2	:	1h3q
	TPPC3_MOUSE \| O55013	:	1wc8 1wc9 2j3r 2j3t 2pwn
UniProtKB/TrEMBL
	Q6DGL5_DANRE \| Q6DGL5	:	2j3r

2j3r	THE CRYSTAL STRUCTURE OF THE BET3-TRS31 HETERODIMER.
2j3t	THE CRYSTAL STRUCTURE OF THE BET3-TRS33-BET5-TRS23 COMPLEX.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (2, 4)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 6)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (19, 27)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File