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(-) Description

Title :  CRYSTAL STRUCTURE OF Q83JN9 FROM SHIGELLA FLEXNERI AT HIGH RESOLUTION. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SFR137.
 
Authors :  A. P. Kuzin, M. Su, S. Jayaraman, S. M. Vorobiev, D. Wang, M. Jiang, K. Cun L. -C. Ma, R. Xiao, J. Liu, M. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomic Consortium (Nesg)
Date :  09 Oct 06  (Deposition) - 24 Oct 06  (Release) - 18 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Q83Jn9 X-Ray Nesg Sfr137, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Arbing, S. K. Handelman, A. P. Kuzin, G. Verdon, C. Wang, M. Su, F. P. Rothenbacher, M. Abashidze, M. Liu, J. M. Hurley, R. Xiao, T. Acton, M. Inouye, G. T. Montelione, N. A. Woychik, J. F. Hunt
Crystal Structures Of Phd-Doc, Higa, And Yeeu Establish Multiple Evolutionary Links Between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure V. 18 996 2010
PubMed-ID: 20696400  |  Reference-DOI: 10.1016/J.STR.2010.04.018

(-) Compounds

Molecule 1 - PUTATIVE STRUCTURAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL(21) + MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YEEU, SF2998, S_3203
    Organism Scientific: SHIGELLA FLEXNERI
    Organism Taxid: 623

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:85 , HIS A:86 , HIS B:86 , GLN B:87BINDING SITE FOR RESIDUE PO4 B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2INW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:27 -Pro A:28
2Thr B:27 -Pro B:28

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2INW)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2INW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with A0A0H2V3M1_S | A0A0H2V3M1 from UniProtKB/TrEMBL  Length:125

    Alignment length:117
                                    13        23        33        43        53        63        73        83        93       103       113       
         A0A0H2V3M1_S     4 TLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA 120
               SCOP domains d2inwa1 A:4-120 Hypothetical protein YeeU                                                                             SCOP domains
               CATH domains -----------------------2inwA01 A:27-120  [code=3.30.450.20, no name defined]                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................eeeeeeeee..eee.hhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeee......eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2inw A   4 TLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLLmKQLELmLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA 120
                                    13        23        33        43        53        63      | 73  |     83        93       103       113       
                                                                                             70-MSE |                                            
                                                                                                   76-MSE                                        


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with A0A0H2V3M1_S | A0A0H2V3M1 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    13        23        33        43        53        63        73        83        93       103       113      
         A0A0H2V3M1_S     4 TLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPA 119
               SCOP domains d2inwb_ B: Hypothetical protein YeeU                                                                                 SCOP domains
               CATH domains -----------------------2inwB01 B:27-119  [code=3.30.450.20, no name defined]                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................eeeeeeeee..eee.hhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeee......eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2inw B   4 TLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLLmKQLELmLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPA 119
                                    13        23        33        43        53        63      | 73  |     83        93       103       113      
                                                                                             70-MSE |                                           
                                                                                                   76-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2INW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

2h28 94% OF RESIDUES ARE IDENTICAL TO 2H28 RELATED ID: SFR137 RELATED DB: TARGETDB