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2IJX
Biol. Unit 3
Info
Asym.Unit (181 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (46 KB)
Biol.Unit 4 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCNA3 MONOMER FROM SULFOLOBUS SOLFATARICUS.
Authors
:
V. Hlinkova, H. Ling
Date
:
01 Oct 06 (Deposition) - 16 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Pcna3 Subunit, Protein-Protein Interaction, Pcna123 Heterotrimer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Hlinkova, G. Xing, J. Bauer, Y. J. Shin, I. Dionne, K. R. Rajashankar S. D. Bell, H. Ling
Structures Of Monomeric, Dimeric And Trimeric Pcna: Pcna-Ring Assembly And Opening.
Acta Crystallogr. , Sect. D V. 64 941 2008
[
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER B:135 , SER B:136 , ASP B:137 , ASP B:212 , ARG C:83
BINDING SITE FOR RESIDUE EDO B 601
02
AC2
SOFTWARE
ASN A:110 , PHE C:69 , ASN C:70 , TYR C:73 , ARG C:112 , HOH C:632 , HOH C:634
BINDING SITE FOR RESIDUE EDO C 602
03
AC3
SOFTWARE
SER C:135 , GLY C:138 , VAL C:174 , GLU C:175 , PHE C:176 , THR C:180 , GLY C:182 , HOH C:662
BINDING SITE FOR RESIDUE EDO C 603
04
AC4
SOFTWARE
TYR A:73 , PHE A:109 , ASN A:110 , ASN C:110 , VAL C:111 , ARG C:112
BINDING SITE FOR RESIDUE EDO A 604
05
AC6
SOFTWARE
THR C:133 , SER C:211 , TYR C:213 , PHE C:227 , PHE C:228 , ASN C:229 , HOH C:670 , HOH C:715
BINDING SITE FOR RESIDUE EDO C 606
06
AC7
SOFTWARE
LYS B:84 , GLU B:85 , SER B:104 , LEU C:210 , SER C:211 , ASP C:212 , ASN C:229 , GLU C:231
BINDING SITE FOR RESIDUE EDO C 607
07
BC2
SOFTWARE
ARG B:9 , ARG B:83 , LYS B:84 , VAL C:10 , ASP C:13 , LYS C:209 , HOH C:630
BINDING SITE FOR RESIDUE EDO C 611
08
BC6
SOFTWARE
EDO B:617 , ARG C:9 , ARG C:83
BINDING SITE FOR RESIDUE EDO C 615
09
BC8
SOFTWARE
VAL B:10 , ASP B:13 , LYS B:209 , HOH B:648 , ARG C:83 , LYS C:84 , EDO C:615
BINDING SITE FOR RESIDUE EDO B 617
10
BC9
SOFTWARE
ILE C:44 , TYR C:196 , SER C:197 , LEU C:240 , ALA C:241 , PRO C:242 , LYS C:243 , VAL C:244
BINDING SITE FOR RESIDUE EDO C 618
11
CC2
SOFTWARE
SER A:131 , GLU A:187 , LYS A:215 , LEU C:126 , GLN C:127 , PHE C:128
BINDING SITE FOR RESIDUE EDO C 620
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (C:33-56)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA3_SULSO
33-56
1
-
-
C:33-56
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2ijxa1 (A:1-126)
1b: SCOP_d2ijxa2 (A:127-244)
1c: SCOP_d2ijxb1 (B:1-126)
1d: SCOP_d2ijxb2 (B:127-244)
1e: SCOP_d2ijxc1 (C:1-126)
1f: SCOP_d2ijxc2 (C:127-244)
1g: SCOP_d2ijxd1 (D:1-126)
1h: SCOP_d2ijxd2 (D:127-244)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Sulfolobus solfataricus [TaxId: 273057]
(3)
1a
d2ijxa1
A:1-126
1b
d2ijxa2
A:127-244
1c
d2ijxb1
B:1-126
1d
d2ijxb2
B:127-244
1e
d2ijxc1
C:1-126
1f
d2ijxc2
C:127-244
1g
d2ijxd1
D:1-126
1h
d2ijxd2
D:127-244
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2ijxA00 (A:1-244)
1b: CATH_2ijxB00 (B:1-244)
1c: CATH_2ijxC00 (C:1-244)
1d: CATH_2ijxD00 (D:1-244)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(2)
1a
2ijxA00
A:1-244
1b
2ijxB00
B:1-244
1c
2ijxC00
C:1-244
1d
2ijxD00
D:1-244
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (46 KB)
Header - Biol.Unit 3
Biol.Unit 4 (45 KB)
Header - Biol.Unit 4
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