2II9 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   ANABAENA SENSORY RHODOPSIN TRANSDUCER

Authors :   L. Vogeley

Date :   27 Sep 06 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Rhodopsin, Transducer, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Vogeley, V. D. Trivedi, O. A. Sineshchekov, E. N. Spudich, J. L. Spudich, H. Luecke
Crystal Structure Of The Anabaena Sensory Rhodopsin Transducer.
J. Mol. Biol. V. 367 741 2007
PubMed-ID: 17289074 | Reference-DOI: 10.1016/J.JMB.2006.11.074
(for further references see the PDB file header)

Molecule 1 - SENSORY RHODOPSIN TRANSDUCER PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PKJ
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ANABAENA SP.
	Organism Taxid	:	1167

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2II9)

(no "Site" information available for 2II9)

(no "SS Bond" information available for 2II9)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:58	-	Pro A:59
2	Asp A:79	-	Pro A:80
3	Gly B:58	-	Pro B:59
4	Asp B:79	-	Pro B:80
5	Gly C:58	-	Pro C:59
6	Asp C:79	-	Pro C:80
7	Gly D:58	-	Pro D:59
8	Asp D:79	-	Pro D:80

(no "SAP(SNP)/Variant" information available for 2II9)

(no "PROSITE Motif" information available for 2II9)

(no "Exon" information available for 2II9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii9a_ A: automat            ed matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii9 A   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10       | -         -|       40        50        60        70        80        90       100    
                                            18           31

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii9b_ B: automat            ed matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii9 B   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10       | -         -|       40        50        60        70        80        90       100    
                                            18           31

Chain C from PDB  Type:PROTEIN  Length:93
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii9c_ C: automate           d matches                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee........-----------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii9 C   1 SLSIGRTCWAIAEGYIPPY-----------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10        |-         -|       40        50        60        70        80        90       100    
                                             19          31

Chain D from PDB  Type:PROTEIN  Length:94
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii9d_ D: automated           matches                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.........----------.eeeeee.....eeeeeeee......eeeeeeee...eeeeee.hhh............eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii9 D   1 SLSIGRTCWAIAEGYIPPYG----------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10        20         -|       40        50        60        70        80        90       100    
                                              20         31

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Class: All beta proteins (24004)

Fold: Hypothetical protein TM1070 (5)

Superfamily: Hypothetical protein TM1070 (5)

Family: automated matches (4)

Protein domain: automated matches (4)

Anabaena sp. [TaxId: 1167] (4)

1a	d2ii9a_	A:
1b	d2ii9b_	B:
1c	d2ii9c_	C:
1d	d2ii9d_	D:

(no "CATH Domain" information available for 2II9)

(no "Pfam Domain" information available for 2II9)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2II9)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 2ii9)

	Cis Peptide Bonds
		Asp A:79 - Pro A:80	[ RasMol ]
		Asp B:79 - Pro B:80	[ RasMol ]
		Asp C:79 - Pro C:80	[ RasMol ]
		Asp D:79 - Pro D:80	[ RasMol ]
		Gly A:58 - Pro A:59	[ RasMol ]
		Gly B:58 - Pro B:59	[ RasMol ]
		Gly C:58 - Pro C:59	[ RasMol ]
		Gly D:58 - Pro D:59	[ RasMol ]

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	2ii9
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	Q8YSC3_NOSS1 \| Q8YSC3	:	2ii7 2ii8 2iia

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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