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(-) Description

Title :  ANABAENA SENSORY RHODOPSIN TRANSDUCER
 
Authors :  L. Vogeley, O. A. Sineshchekov, V. D. Trivedi, E. N. Spudich, J. L. Spudich, H. Luecke
Date :  27 Sep 06  (Deposition) - 20 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,F,H  (1x)
Biol. Unit 2:  C,D,E,G  (1x)
Keywords :  Rhodopsin, Transducer, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Vogeley, V. D. Trivedi, O. A. Sineshchekov, E. N. Spudich, J. L. Spudich, H. Luecke
Crystal Structure Of The Anabaena Sensory Rhodopsin Transducer.
J. Mol. Biol. V. 367 741 2007
PubMed-ID: 17289074  |  Reference-DOI: 10.1016/J.JMB.2006.11.074
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANABAENA SENSORY RHODOPSIN TRANSDUCER PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PKJ
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: ANABAENA SP.
    Organism Taxid: 1167

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB   F H
Biological Unit 2 (1x):   CDE G 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2II8)

(-) Sites  (0, 0)

(no "Site" information available for 2II8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2II8)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Gly A:58 -Pro A:59
2Asp A:79 -Pro A:80
3Gly B:58 -Pro B:59
4Asp B:79 -Pro B:80
5Gly C:58 -Pro C:59
6Asp C:79 -Pro C:80
7Gly D:58 -Pro D:59
8Asp D:79 -Pro D:80
9Gly E:58 -Pro E:59
10Asp E:79 -Pro E:80
11Gly F:58 -Pro F:59
12Asp F:79 -Pro F:80
13Gly G:58 -Pro G:59
14Asp G:79 -Pro G:80
15Gly H:58 -Pro H:59
16Asp H:79 -Pro H:80

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2II8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2II8)

(-) Exons   (0, 0)

(no "Exon" information available for 2II8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8a_ A: automa       ted matches                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......-------.......eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 A   1 SLSIGRTCWAIAEGYIP-------PQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10      |  -    |   30        40        50        60        70        80        90       100    
                                           17      25                                                                               


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8b_ B: automated matches                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....................eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 B   1 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10        20        30        40        50        60        70        80        90       100    


Chain C from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8c_ C: automa            ted matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......------------..eeeeee.....eeeeeeee......eeeeeeee...eeeeee.hhh............eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 C   1 SLSIGRTCWAIAEGYIP------------HETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10      |  -        30        40        50        60        70        80        90       100    
                                           17           30                                                                          


Chain D from PDB  Type:PROTEIN  Length:98
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:103
                                    12        22        32        42        52        62        72        82        92       102   
         Q8YSC3_NOSS1     3 LSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8d_ D: automated ma     tches                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.............-----..eeeeee.....eeeeeeee......eeeeeeee...eeeeee.hhh............eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 D   2 LSIGRTCWAIAEGYIPPYGNGPE-----HETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    11        21  |     31        41        51        61        71        81        91       101   
                                                 24    30                                                                          


Chain E from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8e_ E: automat            ed matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 E   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10       | -         -|       40        50        60        70        80        90       100    
                                            18           31                                                                         


Chain F from PDB  Type:PROTEIN  Length:91
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQH 104
               SCOP domains d2ii8f_ F: automat            ed matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 F   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQH 103
                                    10       | -         -|       40        50        60        70        80        90       100   
                                            18           31                                                                        


Chain G from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8g_ G: automat            ed matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh...........eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 G   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10       | -         -|       40        50        60        70        80        90       100    
                                            18           31                                                                         


Chain H from PDB  Type:PROTEIN  Length:92
 aligned with Q8YSC3_NOSS1 | Q8YSC3 from UniProtKB/TrEMBL  Length:125

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q8YSC3_NOSS1     2 SLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 105
               SCOP domains d2ii8h_ H: automat            ed matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee...------------.eeeeee.....eeeeeeeee.....eeeeeeee...eeeeee.hhh..........eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ii8 H   1 SLSIGRTCWAIAEGYIPP------------ETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHT 104
                                    10       | -         -|       40        50        60        70        80        90       100    
                                            18           31
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2II8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2II8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2II8)

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  Sites
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  Cis Peptide Bonds
    Asp A:79 - Pro A:80   [ RasMol ]  
    Asp B:79 - Pro B:80   [ RasMol ]  
    Asp C:79 - Pro C:80   [ RasMol ]  
    Asp D:79 - Pro D:80   [ RasMol ]  
    Asp E:79 - Pro E:80   [ RasMol ]  
    Asp F:79 - Pro F:80   [ RasMol ]  
    Asp G:79 - Pro G:80   [ RasMol ]  
    Asp H:79 - Pro H:80   [ RasMol ]  
    Gly A:58 - Pro A:59   [ RasMol ]  
    Gly B:58 - Pro B:59   [ RasMol ]  
    Gly C:58 - Pro C:59   [ RasMol ]  
    Gly D:58 - Pro D:59   [ RasMol ]  
    Gly E:58 - Pro E:59   [ RasMol ]  
    Gly F:58 - Pro F:59   [ RasMol ]  
    Gly G:58 - Pro G:59   [ RasMol ]  
    Gly H:58 - Pro H:59   [ RasMol ]  
 
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  2ii8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8YSC3_NOSS1 | Q8YSC3: 2ii7 2ii9 2iia

(-) Related Entries Specified in the PDB File

2ii7 2ii9 2iia