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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RAT GLYCINE N-METHYLTRANSFERASE APOPROTEIN, MONOCLINIC FORM

Authors :   Z. Luka, S. Pakhomova, L. V. Loukachevitch, M. Egli, M. E. Newcomer, C. Wagner

Date :   15 Sep 06 (Deposition) - 19 Dec 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Glycine N-Methyltransferase, Rat, Apoprotein. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Luka, S. Pakhomova, L. V. Loukachevitch, M. Egli, M. E. Newcomer, C. Wagner
5-Methyltetrahydrofolate Is Bound In Intersubunit Areas Of Rat Liver Folate-Binding Protein Glycine N-Methyltransferase.
J. Biol. Chem. V. 282 4069 2007
PubMed-ID: 17158459 | Reference-DOI: 10.1074/JBC.M610384200
(for further references see the PDB file header)

Molecule 1 - GLYCINE N-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PR6
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET17-B
	Gene	:	GNMT
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Strain	:	SPRAGUE-DAWLEY
	Synonym	:	FOLATE-BINDING PROTEIN

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN B:211 , HOH B:297	BINDING SITE FOR RESIDUE CA B 293
2	AC2	SOFTWARE	GLU C:15	BINDING SITE FOR RESIDUE CA C 293

(no "SS Bond" information available for 2IDJ)

(no "Cis Peptide Bond" information available for 2IDJ)

(no "SAP(SNP)/Variant" information available for 2IDJ)

(no "PROSITE Motif" information available for 2IDJ)

Asymmetric/Biological Unit (6, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000022307	1	ENSRNOE00000155790	chr9:10127092-10127301	210	GNMT_RAT	1-69	69	4	A:2-68 B:1-68 C:2-68 D:1-68	67 68 67 68
1.2	ENSRNOT00000022307	2	ENSRNOE00000156216	chr9:10128745-10128872	128	GNMT_RAT	69-112	44	4	A:68-111 B:68-111 C:68-111 D:68-111	44 44 44 44
1.3	ENSRNOT00000022307	3	ENSRNOE00000156616	chr9:10129429-10129539	111	GNMT_RAT	112-149	38	4	A:111-148 B:111-148 C:111-148 D:111-148	38 38 38 38
1.4	ENSRNOT00000022307	4	ENSRNOE00000157087	chr9:10129733-10129875	143	GNMT_RAT	149-196	48	4	A:148-195 B:148-195 C:148-195 D:148-195	48 48 48 48
1.5	ENSRNOT00000022307	5	ENSRNOE00000157394	chr9:10129963-10130084	122	GNMT_RAT	197-237	41	4	A:196-236 (gaps) B:196-236 (gaps) C:196-236 (gaps) D:196-236 (gaps)	41 41 41 41
1.6	ENSRNOT00000022307	6	ENSRNOE00000157770	chr9:10130171-10130444	274	GNMT_RAT	237-293	57	4	A:236-292 B:236-292 C:236-292 D:236-292	57 57 57 57

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:277
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:291
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292 
             GNMT_RAT     3 DSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d2idja_ A: Glycine N-methyltransferase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------2idjA01         2idjA02 A:38-175,A:243-292 Vaccinia Virus protein VP39                                                                                    2idjA01 A:22-37,A:176   -242                                       2idjA02 A:38-175,A:243-292                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.................hhhhhhhhhhhhh....hhhhhhhhhhhhhh....eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.eeee.hhhhhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhhheeeeeeeeeeeehhhhhhhhh............---.eeeeeeeee..eeeeeeeeeee.-----------.eeeeeee...hhhhhhhhhhh.....ee..eee..ee..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:2-68 UniProt: 1-69 [INCOMPLETE]                   ------------------------------------------Exon 1.3  PDB: A:111-148              -----------------------------------------------Exon 1.5  PDB: A:196-236 (gaps)          -------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------Exon 1.2  PDB: A:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: A:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: A:236-292 UniProt: 237-293                 Transcript 1 (2)
                 2idj A   2 DSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKS---KDITTSVLTVNNKAHMVTLDYTVQ-----------FSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    |  201       211       221 |       -   |   241       251       261       271       281       291 
                                                                                                                                                                                                                            196 200                    223         235

Chain B from PDB  Type:PROTEIN  Length:285
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT     2 VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d2idjb_ B: Glycine N-methyltransferase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------2idjB01         2idjB02 B:38-175,B:243-292 Vaccinia Virus protein VP39                                                                                    2idjB01 B:22-37,B:176-242                                          2idjB02 B:38-175,B:243-292                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..................hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.eeee.hhhhhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhh.eeeeeeeeeeeehhhhhhhhh...............eeeeeeeeee..eeeeeeeeeee.....-------.eeeeeee...hhhhhhhhhhhh....eeeeeee..ee..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:1-68 UniProt: 1-69 [INCOMPLETE]                    ------------------------------------------Exon 1.3  PDB: B:111-148              -----------------------------------------------Exon 1.5  PDB: B:196-236 (gaps)          -------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.2  PDB: B:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: B:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: B:236-292 UniProt: 237-293                 Transcript 1 (2)
                 2idj B   1 VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGA-------FSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      |  -    |  240       250       260       270       280       290  
                                                                                                                                                                                                                                                            227     235

Chain C from PDB  Type:PROTEIN  Length:280
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:291
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292 
             GNMT_RAT     3 DSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d2idjc_ C: Glycine N-methyltransferase                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------2idjC01         2idjC02 C:38-175,C:243-292 Vaccinia Virus protein VP39                                                                                    2idjC01 C:22-37,C:176-242                                          2idjC02 C:38-175,C:243-292                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.................hhhhhhhhhhhhh....hhhhhhhhhhhhhh....eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.eeee.hhhhhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhh.eeeeeeeeeeeehhhhhhhhh................eeeeeeeee..eeeeeeeeeee.-----------.eeeeeee...hhhhhhhhhhhh....ee..eee..ee..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:2-68 UniProt: 1-69 [INCOMPLETE]                   ------------------------------------------Exon 1.3  PDB: C:111-148              -----------------------------------------------Exon 1.5  PDB: C:196-236 (gaps)          -------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------Exon 1.2  PDB: C:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: C:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: C:236-292 UniProt: 237-293                 Transcript 1 (2)
                 2idj C   2 DSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQ-----------FSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 |       -   |   241       251       261       271       281       291 
                                                                                                                                                                                                                                                       223         235

Chain D from PDB  Type:PROTEIN  Length:287
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT     2 VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d2idjd_ D: Glycine N-methyltransferase                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------2idjD01         2idjD02 D:38-175,D:243-292 Vaccinia Virus protein VP39                                                                                    2idjD01 D:22-37,D:176-242                                          2idjD02 D:38-175,D:243-292                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.................hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.eeee.hhhhhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhh.eeeeeeeeeeeehhhhhhhhh...............eeeeeeeeee..eeeeeeeeeeeee...-----.eeeeeeeee...hhhhhhhhhhhh....eeeeeee..ee..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:1-68 UniProt: 1-69 [INCOMPLETE]                    ------------------------------------------Exon 1.3  PDB: D:111-148              -----------------------------------------------Exon 1.5  PDB: D:196-236 (gaps)          -------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------Exon 1.2  PDB: D:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: D:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: D:236-292 UniProt: 237-293                 Transcript 1 (2)
                 2idj D   1 VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGA-----PGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      |  -  |    240       250       260       270       280       290  
                                                                                                                                                                                                                                                            227   233

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: Glycine N-methyltransferase (16)

Protein domain: Glycine N-methyltransferase (16)

Norway rat (Rattus norvegicus) [TaxId: 10116] (12)

1a	d2idja_	A:
1b	d2idjb_	B:
1c	d2idjc_	C:
1d	d2idjd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Glycine N-methyltransferase; chain A, domain 1 (14)

Homologous Superfamily: Glycine N-methyltransferase, chain A, domain 1 (14)

Norway rat (Rattus norvegicus) (9)

1a	2idjD01	D:22-37,D:176-242
1b	2idjB01	B:22-37,B:176-242
1c	2idjC01	C:22-37,C:176-242
1d	2idjA01	A:22-37,A:176-242

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Vaccinia Virus protein VP39 (378)

Norway rat (Rattus norvegicus) (23)

2a	2idjA02	A:38-175,A:243-292
2b	2idjB02	B:38-175,B:243-292
2c	2idjC02	C:38-175,C:243-292
2d	2idjD02	D:38-175,D:243-292

(no "Pfam Domain" information available for 2IDJ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (GNMT_RAT | P13255)

molecular function
	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
	GO:0005542	folic acid binding	Interacting selectively and non-covalently with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
	GO:0017174	glycine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine.
	GO:0016594	glycine binding	Interacting selectively and non-covalently with glycine, aminoethanoic acid.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0098603	selenol Se-methyltransferase activity	Catalysis of the reaction: R + Se-Adenosylselenomethionine => CH3-R + Se-Adenosyl-L-selenohomocysteine.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046498	S-adenosylhomocysteine metabolic process	The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine.
	GO:0046500	S-adenosylmethionine metabolic process	The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism.
	GO:0046655	folic acid metabolic process	The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
	GO:0006544	glycine metabolic process	The chemical reactions and pathways involving glycine, aminoethanoic acid.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:1901052	sarcosine metabolic process	The chemical reactions and pathways involving sarcosine.
	GO:0001887	selenium compound metabolic process	The chemical reactions and pathways involving compounds that contain selenium, such as selenocysteine.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric/Biological Unit
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Access by PDB/NDB ID
	2idj
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	GNMT_RAT \| P13255
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	2.1.1.20
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	GNMT_RAT \| P13255
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UniProtKB/Swiss-Prot
	GNMT_RAT \| P13255	:	1bhj 1d2c 1d2g 1d2h 1kia 1nbh 1nbi 1xva 2idk 3thr 3ths

1bhj	THE SAME PROTEIN, ORTHORHOMBIC FORM
1nbh	THE SAME PROTEIN COMPLEXED WITH SAM AND ACETATE
1nbi	THE SAME PROTEIN COMPLEXED WITH SAM
1r74	HUMAN GNMT
1r8x	TETRAGONAL FORM OF MOUSE GNMT
2idk

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (6, 24)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File