1D2H - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF R175K MUTANT GLYCINE N-METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLHOMOCYSTEINE

Authors :   Y. Huang, J. Komoto, F. Takusagawa, K. Konishi, Y. Takata

Date :   11 Oct 99 (Deposition) - 25 Oct 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Methyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Huang, J. Komoto, K. Konishi, Y. Takata, H. Ogawa, T. Gomi, M. Fujioka, F. Takusagawa
Mechanisms For Auto-Inhibition And Forced Product Release In Glycine N-Methyltransferase: Crystal Structures Of Wild-Type, Mutant R175K And S-Adenosylhomocysteine-Bound R175K Enzymes.
J. Mol. Biol. V. 298 149 2000
PubMed-ID: 10756111 | Reference-DOI: 10.1006/JMBI.2000.3637
(for further references see the PDB file header)

Molecule 1 - GLYCINE N-METHYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	WHOLE ENZYME
	Mutation	:	YES
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Tissue	:	LIVER

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SAH	4	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:85 , ALA A:86 , SER A:87 , MET A:90 , ASN A:116 , TRP A:117 , SER A:139 , HIS A:142	BINDING SITE FOR RESIDUE SAH A 1301
2	AC2	SOFTWARE	ALA B:64 , VAL B:69 , ASP B:85 , SER B:87 , MET B:90 , ASN B:116 , TRP B:117 , SER B:139	BINDING SITE FOR RESIDUE SAH B 2301
3	AC3	SOFTWARE	THR C:67 , ASP C:85 , ALA C:86 , SER C:87 , MET C:90 , ALA C:115 , ASN C:116 , TRP C:117 , SER C:139 , TYR C:194	BINDING SITE FOR RESIDUE SAH C 3301
4	AC4	SOFTWARE	ASP D:85 , ALA D:86 , SER D:87 , MET D:90 , ASN D:116 , TRP D:117 , GLY D:137 , SER D:139 , HIS D:142 , HOH D:4370	BINDING SITE FOR RESIDUE SAH D 4301

(no "SS Bond" information available for 1D2H)

(no "Cis Peptide Bond" information available for 1D2H)

(no "SAP(SNP)/Variant" information available for 1D2H)

(no "PROSITE Motif" information available for 1D2H)

Asymmetric/Biological Unit (6, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000022307	1	ENSRNOE00000155790	chr9:10127092-10127301	210	GNMT_RAT	1-69	69	4	A:41-68 B:41-68 C:41-68 D:41-68	28 28 28 28
1.2	ENSRNOT00000022307	2	ENSRNOE00000156216	chr9:10128745-10128872	128	GNMT_RAT	69-112	44	4	A:68-111 B:68-111 C:68-111 D:68-111	44 44 44 44
1.3	ENSRNOT00000022307	3	ENSRNOE00000156616	chr9:10129429-10129539	111	GNMT_RAT	112-149	38	4	A:111-148 B:111-148 C:111-148 D:111-148	38 38 38 38
1.4	ENSRNOT00000022307	4	ENSRNOE00000157087	chr9:10129733-10129875	143	GNMT_RAT	149-196	48	4	A:148-195 B:148-195 C:148-195 D:148-195	48 48 48 48
1.5	ENSRNOT00000022307	5	ENSRNOE00000157394	chr9:10129963-10130084	122	GNMT_RAT	197-237	41	4	A:196-236 B:196-236 C:196-236 D:196-236	41 41 41 41
1.6	ENSRNOT00000022307	6	ENSRNOE00000157770	chr9:10130171-10130444	274	GNMT_RAT	237-293	57	4	A:236-292 B:236-292 C:236-292 D:236-292	57 57 57 57

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:252
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:252
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT    42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d1d2ha_ A: Glycine N-methyltransferase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1d2hA02 A:41-175,A:243-292 Vaccinia Virus protein VP39                                                                                 1d2hA01 A:176-242 Glycine N-methyltransferase, chain A, domain 1   1d2hA02 A:41-175,A:243-292                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhheeeeee.hhhhhhhhhhhhhhh..hhhhhhh..ee....hhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhhheeeeeeeeeeeehhhhhhhhh...............eeeeeeeeee..eeeeeeeeeeeee.........eeeeeeeee...hhhhhhhhhhhhh.....eeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:41-68      ------------------------------------------Exon 1.3  PDB: A:111-148              -----------------------------------------------Exon 1.5  PDB: A:196-236 UniProt: 197-237-------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: A:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: A:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: A:236-292 UniProt: 237-293                 Transcript 1 (2)
                 1d2h A  41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHKNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:252
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:252
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT    42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d1d2hb_ B: Glycine N-methyltransferase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1d2hB02 B:41-175,B:243-292 Vaccinia Virus protein VP39                                                                                 1d2hB01 B:176-242 Glycine N-methyltransferase, chain A, domain 1   1d2hB02 B:41-175,B:243-292                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhh.eeee....hhhhhh.....eeeeee..hhhhhh......hhhhhhhhhhhhhheeeeeeeeeeeehhhhhhhhh...............eeeeeeeeee..eeeeeeeeeeeee.........ee..eeeee...hhhhhhhhhhhhh....eeeee...............eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:41-68      ------------------------------------------Exon 1.3  PDB: B:111-148              -----------------------------------------------Exon 1.5  PDB: B:196-236 UniProt: 197-237-------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: B:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: B:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: B:236-292 UniProt: 237-293                 Transcript 1 (2)
                 1d2h B  41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHKNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain C from PDB  Type:PROTEIN  Length:252
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:252
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT    42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d1d2hc_ C: Glycine N-methyltransferase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1d2hC02 C:41-175,C:243-292 Vaccinia Virus protein VP39                                                                                 1d2hC01 C:176-242 Glycine N-methyltransferase, chain A, domain 1   1d2hC02 C:41-175,C:243-292                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhhheeee....hhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhh.eeeeeeeeeeee...hhhhhh...............eeeeeeeeee..eeeeeeeeeeeee.........eeeeeeeee...hhhhhhhhhhhhhh....eeee...............eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:41-68      ------------------------------------------Exon 1.3  PDB: C:111-148              -----------------------------------------------Exon 1.5  PDB: C:196-236 UniProt: 197-237-------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: C:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: C:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: C:236-292 UniProt: 237-293                 Transcript 1 (2)
                 1d2h C  41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHKNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain D from PDB  Type:PROTEIN  Length:252
 aligned with GNMT_RAT | P13255 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:252
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
             GNMT_RAT    42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293
               SCOP domains d1d2hd_ D: Glycine N-methyltransferase                                                                                                                                                                                                                       SCOP domains
               CATH domains 1d2hD02 D:41-175,D:243-292 Vaccinia Virus protein VP39                                                                                 1d2hD01 D:176-242 Glycine N-methyltransferase, chain A, domain 1   1d2hD02 D:41-175,D:243-292                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhhhhhheeee.hhhhhhhhh.....eeeeee...hhhhh......hhhhhhhhhhhhh.eeeeeeeeeeeehhhhhhhhh...............eeeeeeeeee..eeeeeeeeeeeee.........eeeeeeeee...hhhhhhhhhhhhhh..eeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:41-68      ------------------------------------------Exon 1.3  PDB: D:111-148              -----------------------------------------------Exon 1.5  PDB: D:196-236 UniProt: 197-237-------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: D:68-111 UniProt: 69-112     ------------------------------------Exon 1.4  PDB: D:148-195 UniProt: 149-196       ----------------------------------------Exon 1.6  PDB: D:236-292 UniProt: 237-293                 Transcript 1 (2)
                 1d2h D  41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHKNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 292
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: S-adenosyl-L-methionine-dependent methyltransferases (533)

Superfamily: S-adenosyl-L-methionine-dependent methyltransferases (533)

Family: Glycine N-methyltransferase (16)

Protein domain: Glycine N-methyltransferase (16)

Norway rat (Rattus norvegicus) [TaxId: 10116] (12)

1a	d1d2ha_	A:
1b	d1d2hb_	B:
1c	d1d2hc_	C:
1d	d1d2hd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Glycine N-methyltransferase; chain A, domain 1 (14)

Homologous Superfamily: Glycine N-methyltransferase, chain A, domain 1 (14)

Norway rat (Rattus norvegicus) (9)

1a	1d2hA01	A:176-242
1b	1d2hB01	B:176-242
1c	1d2hC01	C:176-242
1d	1d2hD01	D:176-242

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Vaccinia Virus protein VP39 (378)

Norway rat (Rattus norvegicus) (23)

2a	1d2hA02	A:41-175,A:243-292
2b	1d2hB02	B:41-175,B:243-292
2c	1d2hC02	C:41-175,C:243-292
2d	1d2hD02	D:41-175,D:243-292

(no "Pfam Domain" information available for 1D2H)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (GNMT_RAT | P13255)

molecular function
	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
	GO:0005542	folic acid binding	Interacting selectively and non-covalently with folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
	GO:0017174	glycine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine.
	GO:0016594	glycine binding	Interacting selectively and non-covalently with glycine, aminoethanoic acid.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0098603	selenol Se-methyltransferase activity	Catalysis of the reaction: R + Se-Adenosylselenomethionine => CH3-R + Se-Adenosyl-L-selenohomocysteine.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046498	S-adenosylhomocysteine metabolic process	The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine.
	GO:0046500	S-adenosylmethionine metabolic process	The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism.
	GO:0046655	folic acid metabolic process	The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
	GO:0006544	glycine metabolic process	The chemical reactions and pathways involving glycine, aminoethanoic acid.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:1901052	sarcosine metabolic process	The chemical reactions and pathways involving sarcosine.
	GO:0001887	selenium compound metabolic process	The chemical reactions and pathways involving compounds that contain selenium, such as selenocysteine.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 1d2h)

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Access by PDB/NDB ID
	1d2h
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	GNMT_RAT \| P13255
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	2.1.1.20
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	GNMT_RAT \| P13255
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UniProtKB/Swiss-Prot
	GNMT_RAT \| P13255	:	1bhj 1d2c 1d2g 1kia 1nbh 1nbi 1xva 2idj 2idk 3thr 3ths

1d2c	1D2C CONTAINS THE WILD TYPE ENZYME.
1d2g	1D2G CONTAINS THE R175K MUTANT ENZYME.
1xva	1XVA CONTAINS THE WILD TYPE ENZYME COMPLEXED WITH S- ADENOSYLMETHIONINE.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (6, 24)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

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