2I5Z - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF OSPA MUTANT

Authors :   K. Makabe, V. Terechko, S. Koide

Date :   26 Aug 06 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym./Biol. Unit : O

Keywords :   Beta-Sheet, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Yan, G. Gawlak, K. Makabe, V. Tereshko, A. Koide, S. Koide
Hydrophobic Surface Burial Is The Major Stability Determinant Of A Flat, Single-Layer Beta-Sheet.
J. Mol. Biol. V. 368 230 2007
PubMed-ID: 17335845 | Reference-DOI: 10.1016/J.JMB.2007.02.003
(for further references see the PDB file header)

Molecule 1 - OUTER SURFACE PROTEIN A
	Chains	:	O
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET24A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	OSPA
	Organism Common	:	LYME DISEASE SPIROCHETE
	Organism Scientific	:	BORRELIA BURGDORFERI
	Organism Taxid	:	139

		1
Asymmetric/Biological Unit	:	O

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR O:122 , GLU O:124 , LYS O:135 , LYS O:193 , HOH O:942 , HOH O:1255 , HOH O:1315 , HOH O:1340	BINDING SITE FOR RESIDUE PG4 O 801

(no "SS Bond" information available for 2I5Z)

(no "Cis Peptide Bond" information available for 2I5Z)

Asymmetric/Biological Unit (10, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_OSPA_BORBU_001 *	P	35	S	OSPA_BORBU	---	---	O	P	35	S
02	UniProt	VAR_OSPA_BORBU_002 *	K	39	N	OSPA_BORBU	---	---	O	K	39	N
03	UniProt	VAR_OSPA_BORBU_003 *	D	59	H	OSPA_BORBU	---	---	O	D	59	H
04	UniProt	VAR_OSPA_BORBU_004 *	I	90	V	OSPA_BORBU	---	---	O	I	90	V
05	UniProt	VAR_OSPA_BORBU_005 *	V	114	A	OSPA_BORBU	---	---	O	V	114	A
06	UniProt	VAR_OSPA_BORBU_006 *	N	127	S	OSPA_BORBU	---	---	O	N	127	S
07	UniProt	VAR_OSPA_BORBU_007 *	R	144	K	OSPA_BORBU	---	---	O	R	144	K
08	UniProt	VAR_OSPA_BORBU_008 *	G	149	E	OSPA_BORBU	---	---	O	G	149	E
09	UniProt	VAR_OSPA_BORBU_009 *	G	164	S	OSPA_BORBU	---	---	O	G	164	S
10	UniProt	VAR_OSPA_BORBU_010 *	E	196	A	OSPA_BORBU	---	---	O	E	196	A
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2I5Z)

(no "Exon" information available for 2I5Z)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain O from PDB  Type:PROTEIN  Length:246
 aligned with OSPA_BORBU | P0CL66 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:246
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
           OSPA_BORBU    28 NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNALK 273
               SCOP domains d2i5zo_ O: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------2i5zO02 O:128-273  [code=3.90.930.1, no name defined]                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeehhheeeeee........eeeeeee..eeeeeee......eeeeee.....eeeeee.....eeeeeee......eeeeeeee....eeeeee.....eeeeeee.....eeeee.......eeeeee....eeeeee...eeeeeeee..eeeeeeee....eeeeeee........eeeeee....eeeeee..eeeeeeee.....eeeee............eee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------S---N-------------------H------------------------------V-----------------------A------------S----------------K----E--------------S-------------------------------A----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2i5z O  28 NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTEEKANEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 273
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267

Chain O from PDB  Type:PROTEIN  Length:246
 aligned with Q45040_BORBG | Q45040 from UniProtKB/TrEMBL  Length:273

    Alignment length:246
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
         Q45040_BORBG    28 NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNALK 273
               SCOP domains d2i5zo_ O: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------2i5zO02 O:128-273  [code=3.90.930.1, no name defined]                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeehhheeeeee........eeeeeee..eeeeeee......eeeeee.....eeeeee.....eeeeeee......eeeeeeee....eeeeee.....eeeeeee.....eeeee.......eeeeee....eeeeee...eeeeeeee..eeeeeeee....eeeeeee........eeeeee....eeeeee..eeeeeeee.....eeeee............eee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------S---N-------------------H------------------------------V-----------------------A------------S----------------K----E--------------S-------------------------------A----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2i5z O  28 NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTEEKANEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 273
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: open-sided beta-meander (34)

Superfamily: Outer surface protein (17)

Family: Outer surface protein (17)

Protein domain: automated matches (13)

Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139] (13)

d2i5zo_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Outer Surface Protein A; domain 3 (152)

Homologous Superfamily: [code=3.90.930.1, no name defined] (13)

Lyme disease spirochete (Borrelia burgdorferi) (11)

2i5zO02

O:128-273

(no "Pfam Domain" information available for 2I5Z)

Asymmetric/Biological Unit(hide GO term definitions)

Chain O (Q45040_BORBG | Q45040)

cellular component
	GO:0009279		cell outer membrane		A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.

Chain O (OSPA_BORBU | P0CL66)

cellular component
	GO:0009279		cell outer membrane		A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2i5z)

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	Q45040_BORBG \| Q45040
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UniProtKB/Swiss-Prot
	OSPA_BORBU \| P0CL66	:	1fj1 1osp 2af5 2fkg 2fkj 2g8c 2hkd 2i5v 2ol6 2ol7 2ol8 2oy1 2oy5 2oy7 2oy8 2oyb 2pi3 3aum 5b10 5b11
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	Q45040_BORBG \| Q45040	:	2ol6 2pi3 3cka 3ckf 3ckg 5b3m

(no "Related Entries Specified in the PDB File" available for 2I5Z)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (10, 10)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

CATH Domains (1, 1)

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Gene Ontology (2, 3)

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