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(-) Description

Title :  CRYSTAL STRUCTURE OF OSPA MUTANT
 
Authors :  K. Makabe, V. Terechko, S. Koide
Date :  25 Aug 06  (Deposition) - 25 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  O
Keywords :  Beta-Sheet, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Makabe, M. Biancalana, S. Yan, V. Tereshko, G. Gawlak, H. Miller-Auer, S. C. Meredith, S. Koide
High-Resolution Structure Of A Self-Assembly-Competent Form Of A Hydrophobic Peptide Captured In A Soluble β -Sheet Scaffold.
J. Mol. Biol. V. 378 459 2008
PubMed-ID: 18367205  |  Reference-DOI: 10.1016/J.JMB.2008.02.051
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OUTER SURFACE PROTEIN A
    Chains: O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: OSPA
    Organism Common: LYME DISEASE SPIROCHETE
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 139

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : O

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS O:135 , TYR O:147 , ILE O:150 , HOH O:1160 , HOH O:1169BINDING SITE FOR RESIDUE PG4 O 800
2AC2SOFTWAREASP O:59 , LYS O:80 , VAL O:101 , HOH O:1055BINDING SITE FOR RESIDUE PG4 O 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2I5V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2I5V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 10)

Asymmetric/Biological Unit (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_OSPA_BORBU_001 *P35SOSPA_BORBU  ---  ---OP35S
02UniProtVAR_OSPA_BORBU_002 *K39NOSPA_BORBU  ---  ---OK39N
03UniProtVAR_OSPA_BORBU_003 *D59HOSPA_BORBU  ---  ---OD59H
04UniProtVAR_OSPA_BORBU_004 *I90VOSPA_BORBU  ---  ---OI90V
05UniProtVAR_OSPA_BORBU_005 *V114AOSPA_BORBU  ---  ---OV114A
06UniProtVAR_OSPA_BORBU_006 *N127SOSPA_BORBU  ---  ---ON127S
07UniProtVAR_OSPA_BORBU_007 *R144KOSPA_BORBU  ---  ---OR144K
08UniProtVAR_OSPA_BORBU_008 *G149EOSPA_BORBU  ---  ---OG149E
09UniProtVAR_OSPA_BORBU_009 *G164SOSPA_BORBU  ---  ---OG164S
10UniProtVAR_OSPA_BORBU_010 *E196AOSPA_BORBU  ---  ---OE196A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I5V)

(-) Exons   (0, 0)

(no "Exon" information available for 2I5V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain O from PDB  Type:PROTEIN  Length:246
 aligned with OSPA_BORBU | P0CL66 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:246
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
           OSPA_BORBU    28 NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNALK 273
               SCOP domains d2i5vo_ O: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------2i5vO02 O:128-273  [code=3.90.930.1, no name defined]                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...eeeee.........eeeeeee..eeeeeee......eeeeee.....eeeeee......eeeeee......eeeeeee.....eeeeee.....eeeeeee.....eeeee.......eeeeeee..eeeeeee...eeeeeeee..eeeeeeee....eeeeeee........eeeeee....eeeeee..eeeeeeee.....eeeee............ee..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------S---N-------------------H------------------------------V-----------------------A------------S----------------K----E--------------S-------------------------------A----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2i5v O  28 NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKIIIIIKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 273
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      


Chain O from PDB  Type:PROTEIN  Length:246
 aligned with Q45040_BORBG | Q45040 from UniProtKB/TrEMBL  Length:273

    Alignment length:246
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
         Q45040_BORBG    28 NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNALK 273
               SCOP domains d2i5vo_ O: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------2i5vO02 O:128-273  [code=3.90.930.1, no name defined]                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...eeeee.........eeeeeee..eeeeeee......eeeeee.....eeeeee......eeeeee......eeeeeee.....eeeeee.....eeeeeee.....eeeee.......eeeeeee..eeeeeee...eeeeeeee..eeeeeeee....eeeeeee........eeeeee....eeeeee..eeeeeeee.....eeeee............ee..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------S---N-------------------H------------------------------V-----------------------A------------S----------------K----E--------------S-------------------------------A----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2i5v O  28 NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKIIIIIKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK 273
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I5V)

(-) Gene Ontology  (2, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain O   (Q45040_BORBG | Q45040)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.

Chain O   (OSPA_BORBU | P0CL66)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  2i5v
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  Q45040_BORBG | Q45040
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSPA_BORBU | P0CL66: 1fj1 1osp 2af5 2fkg 2fkj 2g8c 2hkd 2i5z 2ol6 2ol7 2ol8 2oy1 2oy5 2oy7 2oy8 2oyb 2pi3 3aum 5b10 5b11
        Q45040_BORBG | Q45040: 2fkg 2fkj 2i5z 2ol7 2ol8 2oy1 2oy5 2oy7 2oy8 2oyb 5b2a
UniProtKB/TrEMBL
        Q45040_BORBG | Q45040: 2ol6 2pi3 3cka 3ckf 3ckg 5b3m

(-) Related Entries Specified in the PDB File

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