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(-) Description

Title :  CRYSTAL STRUCTURE OF P5CR COMPLEXED WITH NADH
 
Authors :  Z. Meng, Z. Lou, Z. Liu, Z. Rao
Date :  23 Apr 06  (Deposition) - 03 Oct 06  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  D (1x),E (1x)
Biol. Unit 7:  A (1x),C (1x)
Biol. Unit 8:  B  (2x)
Keywords :  Crystal Strucutre, Human Pyrroline-5-Carboxylate Reductase, Nadh, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Meng, Z. Lou, Z. Liu, M. Li, X. Zhao, M. Bartlam, Z. Rao
Crystal Structure Of Human Pyrroline-5-Carboxylate Reductas
J. Mol. Biol. V. 359 1364 2006
PubMed-ID: 16730026  |  Reference-DOI: 10.1016/J.JMB.2006.04.053

(-) Compounds

Molecule 1 - PYRROLINE-5-CARBOXYLATE REDUCTASE 1
    ChainsA, B, C, D, E
    EC Number1.5.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymP5CR 1, P5C REDUCTASE 1

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit ABCDE
Biological Unit 1 (1x)A    
Biological Unit 2 (1x) B   
Biological Unit 3 (1x)  C  
Biological Unit 4 (1x)   D 
Biological Unit 5 (1x)    E
Biological Unit 6 (1x)   D (1x)E (1x)
Biological Unit 7 (1x)A (1x) C (1x)  
Biological Unit 8 (2x) B   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1GLU5Mod. Amino AcidGLUTAMIC ACID
2NAI5Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 6 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 7 (2, 2)
No.NameCountTypeFull Name
1GLU1Mod. Amino AcidGLUTAMIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Biological Unit 8 (2, 4)
No.NameCountTypeFull Name
1GLU2Mod. Amino AcidGLUTAMIC ACID
2NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:129 , GLU A:130 , SER A:154 , GLY A:157 , PHE A:158 , LEU A:218 , HIS A:219 , GLU A:1301 , HOH A:1408 , HOH A:1412 , HOH A:1431 , HOH A:1435 , ARG C:204 , GLN C:208 , HOH C:3395BINDING SITE FOR RESIDUE NAI A 1300
02AC2SOFTWARENAI A:1300 , HOH A:1401 , HOH A:1408 , HOH A:1429BINDING SITE FOR RESIDUE GLU A 1301
03AC3SOFTWAREARG B:129 , GLU B:130 , SER B:154 , SER B:155 , VAL B:156 , GLY B:157 , PHE B:158 , ARG B:200 , ARG B:204 , GLN B:208 , LEU B:211 , LEU B:218 , HIS B:219 , GLU B:2301 , HOH B:2359 , HOH B:2377 , HOH B:2380BINDING SITE FOR RESIDUE NAI B 2300
04AC4SOFTWAREARG B:129 , NAI B:2300BINDING SITE FOR RESIDUE GLU B 2301
05AC5SOFTWAREARG A:204 , LEU A:205 , GLN A:208 , LEU A:211 , ARG C:129 , GLU C:130 , SER C:154 , SER C:155 , GLY C:157 , PHE C:158 , LEU C:218 , HIS C:219 , GLU C:3301 , HOH C:3408BINDING SITE FOR RESIDUE NAI C 3300
06AC6SOFTWAREARG C:129 , NAI C:3300BINDING SITE FOR RESIDUE GLU C 3301
07AC7SOFTWAREGLU D:130 , SER D:154 , PHE D:158 , LYS D:215 , LEU D:218 , HIS D:219 , GLU D:4301 , HOH D:4410 , HOH D:4413 , HOH D:4416 , HOH D:4423 , HOH D:4436 , ARG E:204 , GLN E:208BINDING SITE FOR RESIDUE NAI D 4300
08AC8SOFTWARENAI D:4300BINDING SITE FOR RESIDUE GLU D 4301
09AC9SOFTWAREARG D:204 , GLN D:208 , GLU E:130 , SER E:154 , GLY E:157 , PHE E:158 , LEU E:218 , HIS E:219 , GLU E:5301 , HOH E:5402 , HOH E:5404BINDING SITE FOR RESIDUE NAI E 5300
10BC1SOFTWAREHIS E:219 , NAI E:5300BINDING SITE FOR RESIDUE GLU E 5301

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:95 -A:120
2B:95 -B:120
3C:95 -C:120
4D:95 -D:120
5E:95 -E:120

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GR9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 50)

Asymmetric Unit (10, 50)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376A/B/C/D/ER119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377A/B/C/D/ER119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598A/B/C/D/EA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---A/B/C/D/EA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375A/B/C/D/EG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375A/B/C/D/EG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319A/B/C/D/EG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378A/B/C/D/ER251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318A/B/C/D/EA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374A/B/C/D/ER266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376AR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377AR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598AA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---AA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375AG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375AG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319AG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378AR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318AA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374AR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376BR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377BR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598BA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---BA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375BG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375BG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319BG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378BR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318BA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374BR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376CR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377CR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598CA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---CA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375CG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375CG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319CG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378CR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318CA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374CR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376DR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377DR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598DA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---DA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375DG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375DG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319DG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378DR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318DA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374DR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376ER119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377ER119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598EA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---EA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375EG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375EG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319EG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378ER251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318EA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374ER266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376D/ER119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377D/ER119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598D/EA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---D/EA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375D/EG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375D/EG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319D/EG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378D/ER251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318D/EA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374D/ER266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 7 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376A/CR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377A/CR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598A/CA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---A/CA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375A/CG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375A/CG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319A/CG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378A/CR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318A/CA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374A/CR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 8 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_059068R119GP5CR1_HUMANDisease (ARCL2B)121918376BR119G
02UniProtVAR_059069R119HP5CR1_HUMANDisease (ARCL2B)121918377BR119H
03UniProtVAR_059070A179TP5CR1_HUMANDisease (ARCL2B)139751598BA179T
04UniProtVAR_059071A189VP5CR1_HUMANPolymorphism  ---BA189V
05UniProtVAR_059072G206RP5CR1_HUMANDisease (ARCL2B)121918375BG206R
06UniProtVAR_059073G206WP5CR1_HUMANDisease (ARCL2B)121918375BG206W
07UniProtVAR_067600G248EP5CR1_HUMANDisease (ARCL3B)281875319BG248E
08UniProtVAR_059074R251HP5CR1_HUMANDisease (ARCL3B)121918378BR251H
09UniProtVAR_059075A257TP5CR1_HUMANDisease (ARCL3B)281875318BA257T
10UniProtVAR_059076R266QP5CR1_HUMANDisease (ARCL2B)121918374BR266Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 5)

Asymmetric Unit (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  5A:224-246
B:224-246
C:224-246
D:224-246
E:224-246
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  1A:224-246
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  1-
B:224-246
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  1-
-
C:224-246
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  1-
-
-
D:224-246
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  1-
-
-
-
E:224-246
Biological Unit 6 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  2-
-
-
D:224-246
E:224-246
Biological Unit 7 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  2A:224-246
-
C:224-246
-
-
Biological Unit 8 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P5CRPS00521 Delta 1-pyrroline-5-carboxylate reductase signature.P5CR1_HUMAN224-246
 
 
 
 
  2-
B:224-246
-
-
-

(-) Exons   (7, 35)

Asymmetric Unit (7, 35)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000003298753aENSE00001511592chr17:79894968-79894624345P5CR1_HUMAN1-23235A:1-23
B:1-23
C:1-23
D:1-23
E:1-23
23
23
23
23
23
1.4ENST000003298754ENSE00001321886chr17:79894069-7989399971P5CR1_HUMAN23-46245A:23-46
B:23-46
C:23-46
D:23-46
E:23-46
24
24
24
24
24
1.5ENST000003298755ENSE00001609318chr17:79893392-79893213180P5CR1_HUMAN47-106605A:47-106
B:47-106 (gaps)
C:47-106
D:47-106
E:47-106
60
60
60
60
60
1.6ENST000003298756ENSE00001295081chr17:79893023-79892802222P5CR1_HUMAN107-180745A:107-180
B:107-180
C:107-180
D:107-180
E:107-180
74
74
74
74
74
1.7ENST000003298757ENSE00001652123chr17:79892621-7989252993P5CR1_HUMAN181-211315A:181-211
B:181-211
C:181-211
D:181-211
E:181-211
31
31
31
31
31
1.8bENST000003298758bENSE00001731739chr17:79892365-79892202164P5CR1_HUMAN212-266555A:212-266
B:212-266
C:212-266
D:212-266
E:212-266
55
55
55
55
55
1.9bENST000003298759bENSE00001665866chr17:79891252-79890269984P5CR1_HUMAN266-319545A:266-275
B:266-275
C:266-275
D:266-275
E:266-275
10
10
10
10
10

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:277
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:277
                              1                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
          P5CR1_HUMAN     - --MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2gr9a1 A:-1-164 automated matches                                                                                                                                    d2gr9a2 A:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhh.eee...hhhhhhh.eeee......hhhhhhhhhhhh....eeee.....hhhhhhh.hhhhh....eeeee.hhhhhh..eeeeeee....hhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: A:224-246   ----------------------------- PROSITE
           Transcript 1 (1) --Exon 1.3a  PDB: A:1-23 -----------------------Exon 1.5  PDB: A:47-106 UniProt: 47-106                     Exon 1.6  PDB: A:107-180 UniProt: 107-180                                 Exon 1.7  PDB: A:181-211       Exon 1.8b  PDB: A:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: A:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2gr9 A  -1 RGMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       

Chain B from PDB  Type:PROTEIN  Length:276
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:277
                              1                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
          P5CR1_HUMAN     - --MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2gr9b1 B:-1-164 automated matches                                                                                                                                    d2gr9b2 B:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhh......................hhhhhhhhh.-.....hhhhh...eee..............hhhhh....eee......hhhhh............ee.ee.hhhhhh.....ee..........hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: B:224-246   ----------------------------- PROSITE
           Transcript 1 (1) --Exon 1.3a  PDB: B:1-23 -----------------------Exon 1.5  PDB: B:47-106 (gaps) UniProt: 47-106              Exon 1.6  PDB: B:107-180 UniProt: 107-180                                 Exon 1.7  PDB: B:181-211       Exon 1.8b  PDB: B:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: B:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2gr9 B  -1 RGMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV-LTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     8        18        28        38        48 | |    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
                                                                              50 |                                                                                                                                                                                                                               
                                                                                52                                                                                                                                                                                                                               

Chain C from PDB  Type:PROTEIN  Length:277
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:277
                              1                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
          P5CR1_HUMAN     - --MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2gr9c1 C:-1-164 automated matches                                                                                                                                    d2gr9c2 C:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....hhhhhhhhhhhhhhh......ee.............hhhhhh......hhhhh.........hhhhhhhhhhhhhhhh.............hhhhhh...........eeeeee.hhhhh..eeeeeeee.........hhhhhh...eeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhh..hhhhhh...hhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: C:224-246   ----------------------------- PROSITE
           Transcript 1 (1) --Exon 1.3a  PDB: C:1-23 -----------------------Exon 1.5  PDB: C:47-106 UniProt: 47-106                     Exon 1.6  PDB: C:107-180 UniProt: 107-180                                 Exon 1.7  PDB: C:181-211       Exon 1.8b  PDB: C:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: C:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2gr9 C  -1 RGMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       

Chain D from PDB  Type:PROTEIN  Length:277
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:277
                              1                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
          P5CR1_HUMAN     - --MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2gr9d1 D:-1-164 automated matches                                                                                                                                    d2gr9d2 D:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh..hhh.eeee......hhhhhhhhhh.eee.hhhhhhhh..eeee....hhhhhhhhhhhh......eeeee....hhhhhhhhhh.......eeeee.hhhhhh..eeeeeee....hhhhhhhhhhhh...eeeee......hhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: D:224-246   ----------------------------- PROSITE
           Transcript 1 (1) --Exon 1.3a  PDB: D:1-23 -----------------------Exon 1.5  PDB: D:47-106 UniProt: 47-106                     Exon 1.6  PDB: D:107-180 UniProt: 107-180                                 Exon 1.7  PDB: D:181-211       Exon 1.8b  PDB: D:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: D:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2gr9 D  -1 RGMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       

Chain E from PDB  Type:PROTEIN  Length:277
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:277
                              1                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       
          P5CR1_HUMAN     - --MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2gr9e1 E:-1-164 automated matches                                                                                                                                    d2gr9e2 E:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...hhh.eeee.......hhhhhhhh..eee.hhhhhhhhh.eeee.....hhhhhhhhhh.......eeee......hhhhhh..........eeeee.hhhhhhh.eeeeeee......hhhhhhhhhhh..eeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: E:224-246   ----------------------------- PROSITE
           Transcript 1 (1) --Exon 1.3a  PDB: E:1-23 -----------------------Exon 1.5  PDB: E:47-106 UniProt: 47-106                     Exon 1.6  PDB: E:107-180 UniProt: 107-180                                 Exon 1.7  PDB: E:181-211       Exon 1.8b  PDB: E:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: E:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2gr9 E  -1 RGMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 10)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GR9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GR9)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (P5CR1_HUMAN | P32322)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004735    pyrroline-5-carboxylate reductase activity    Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
biological process
    GO:0055129    L-proline biosynthetic process    The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0034599    cellular response to oxidative stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:1903206    negative regulation of hydrogen peroxide-induced cell death    Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-induced cell death.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006561    proline biosynthetic process    The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
    GO:0051881    regulation of mitochondrial membrane potential    Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.
cellular component
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        P5CR1_HUMAN | P323222ger 2gra 2izz 5uat 5uau 5uav 5uaw 5uax

(-) Related Entries Specified in the PDB File

2gra