2IZZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN PYRROLINE-5-CARBOXYLATE REDUCTASE

Authors :   A. C. W. Pike, K. Guo, K. Kavanagh, E. S. Pilka, G. Berridge, S. Colebrook E. Salah, P. Savitsky, E. Papagrigoriou, A. P. Turnbull, F. Von Delft C. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, U. Oppermann

Date :   31 Jul 06 (Deposition) - 01 Aug 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E  (2x)

Keywords :   Amino-Acid Biosynthesis, Nadp, Oxidoreductase, Proline Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. C. W. Pike, K. Guo, K. Kavanagh, E. S. Pilka, G. Berridge, S. Colebrook, J. Bray, E. Salah, P. Savitsky, E. Papagrigoriou, A. P. Turnbull, F. Von Delft, C. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, U. Oppermann
Crystal Structure Of Human Pyrroline-5-Carboxylate Reductas
To Be Published
PubMed: search

Molecule 1 - PYRROLINE-5-CARBOXYLATE REDUCTASE 1
	Chains	:	A, B, C, D, E
	EC Number	:	1.5.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	CATALYTIC DOMAIN, RESIDUES 1-300
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PYRROLINE-5-CARBOXYLATE REDUCTASE, P5CR 1, P5C REDUCTASE 1

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (2x)	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	NAD	5	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 1 (2, 24)

No.	Name	Count	Type	Full Name
1	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
2	NAD	10	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:6 , GLY A:7 , ALA A:8 , GLY A:9 , GLN A:10 , LEU A:11 , SER A:33 , SER A:34 , PRO A:35 , LEU A:39 , ASN A:56 , ALA A:69 , VAL A:70 , LYS A:71 , PRO A:72 , ILE A:78 , CYS A:95 , ALA A:96 , ALA A:97 , MET A:121 , THR A:122 , THR A:124 , EDO A:1273 , HOH A:2026 , HOH A:2036 , HOH A:2146 , HOH A:2147 , HOH A:2148 , HOH A:2150 , HOH A:2151 , ASN B:230 , VAL B:231 , SER B:233	BINDING SITE FOR RESIDUE NAD A 350
02	AC2	SOFTWARE	VAL A:231 , THR A:238 , HOH A:2152 , GLY B:175 , NAD B:350	BINDING SITE FOR RESIDUE EDO A1272
03	AC3	SOFTWARE	GLY A:175 , NAD A:350 , HOH A:2153 , VAL B:231 , THR B:238	BINDING SITE FOR RESIDUE EDO A1273
04	AC4	SOFTWARE	ASN A:230 , SER A:233 , HOH A:2113 , HOH A:2154 , LYS B:71 , NAD B:350	BINDING SITE FOR RESIDUE EDO A1274
05	AC5	SOFTWARE	ASN A:230 , VAL A:231 , EDO A:1272 , EDO A:1274 , HOH A:2117 , GLY B:7 , ALA B:8 , GLY B:9 , GLN B:10 , LEU B:11 , SER B:34 , PRO B:35 , LEU B:39 , ASN B:56 , ALA B:69 , VAL B:70 , LYS B:71 , PRO B:72 , ILE B:78 , CYS B:95 , ALA B:96 , ALA B:97 , MET B:121 , THR B:122 , THR B:124 , HOH B:2038 , HOH B:2161 , HOH B:2162 , HOH B:2163 , HOH B:2164 , HOH B:2165 , HOH B:2166	BINDING SITE FOR RESIDUE NAD B 350
06	AC6	SOFTWARE	ILE C:6 , GLY C:7 , ALA C:8 , GLY C:9 , GLN C:10 , LEU C:11 , SER C:34 , PRO C:35 , ASN C:56 , ALA C:69 , VAL C:70 , LYS C:71 , PRO C:72 , ILE C:78 , CYS C:95 , ALA C:96 , ALA C:97 , THR C:122 , THR C:124 , EDO C:1277 , HOH C:2121 , HOH C:2122 , HOH C:2123 , HOH C:2124 , HOH C:2125 , HOH C:2126 , ASN D:230 , VAL D:231 , EDO D:1272	BINDING SITE FOR RESIDUE NAD C 350
07	AC7	SOFTWARE	VAL C:231 , SER C:233 , THR C:238 , NAD D:350	BINDING SITE FOR RESIDUE EDO C1276
08	AC8	SOFTWARE	ALA C:97 , THR C:171 , GLY C:175 , NAD C:350 , HOH C:2127 , VAL D:231 , THR D:238	BINDING SITE FOR RESIDUE EDO C1277
09	AC9	SOFTWARE	ASN C:230 , VAL C:231 , SER C:233 , EDO C:1276 , ALA D:8 , GLY D:9 , GLN D:10 , LEU D:11 , SER D:33 , SER D:34 , PRO D:35 , LEU D:39 , ASN D:56 , ALA D:69 , VAL D:70 , LYS D:71 , PRO D:72 , CYS D:95 , ALA D:96 , ALA D:97 , THR D:122 , THR D:124 , HOH D:2122 , HOH D:2123 , HOH D:2125 , HOH D:2126	BINDING SITE FOR RESIDUE NAD D 350
10	BC1	SOFTWARE	NAD C:350 , ASN D:230 , SER D:233 , HOH D:2127	BINDING SITE FOR RESIDUE EDO D1272
11	BC2	SOFTWARE	GLY E:7 , ALA E:8 , GLY E:9 , GLN E:10 , LEU E:11 , SER E:34 , PRO E:35 , LEU E:39 , ASN E:56 , ALA E:69 , VAL E:70 , LYS E:71 , PRO E:72 , CYS E:95 , ALA E:96 , ALA E:97 , THR E:122 , THR E:124 , VAL E:231 , EDO E:1273 , HOH E:2117 , HOH E:2118 , HOH E:2119 , HOH E:2120	BINDING SITE FOR RESIDUE NAD E 350
12	BC3	SOFTWARE	LYS E:71 , ASN E:230 , SER E:233 , NAD E:350	BINDING SITE FOR RESIDUE EDO E1273

(no "SS Bond" information available for 2IZZ)

(no "Cis Peptide Bond" information available for 2IZZ)

Asymmetric Unit (10, 50)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_059068	R	119	G	P5CR1_HUMAN	Disease (ARCL2B)	121918376	A/B/C/D/E	R	119	G
02	UniProt	VAR_059069	R	119	H	P5CR1_HUMAN	Disease (ARCL2B)	121918377	A/B/C/D/E	R	119	H
03	UniProt	VAR_059070	A	179	T	P5CR1_HUMAN	Disease (ARCL2B)	139751598	A/B/C/D/E	A	179	T
04	UniProt	VAR_059071	A	189	V	P5CR1_HUMAN	Polymorphism	---	A/B/C/D/E	A	189	V
05	UniProt	VAR_059072	G	206	R	P5CR1_HUMAN	Disease (ARCL2B)	121918375	A/B/C/D/E	G	206	R
06	UniProt	VAR_059073	G	206	W	P5CR1_HUMAN	Disease (ARCL2B)	121918375	A/B/C/D/E	G	206	W
07	UniProt	VAR_067600	G	248	E	P5CR1_HUMAN	Disease (ARCL3B)	281875319	A/B/C/D/E	G	248	E
08	UniProt	VAR_059074	R	251	H	P5CR1_HUMAN	Disease (ARCL3B)	121918378	A/B/C/D/E	R	251	H
09	UniProt	VAR_059075	A	257	T	P5CR1_HUMAN	Disease (ARCL3B)	281875318	A/B/C/D/E	A	257	T
10	UniProt	VAR_059076	R	266	Q	P5CR1_HUMAN	Disease (ARCL2B)	121918374	A/B/C/D/E	R	266	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (10, 100)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_059068	R	119	G	P5CR1_HUMAN	Disease (ARCL2B)	121918376	A/B/C/D/E	R	119	G
02	UniProt	VAR_059069	R	119	H	P5CR1_HUMAN	Disease (ARCL2B)	121918377	A/B/C/D/E	R	119	H
03	UniProt	VAR_059070	A	179	T	P5CR1_HUMAN	Disease (ARCL2B)	139751598	A/B/C/D/E	A	179	T
04	UniProt	VAR_059071	A	189	V	P5CR1_HUMAN	Polymorphism	---	A/B/C/D/E	A	189	V
05	UniProt	VAR_059072	G	206	R	P5CR1_HUMAN	Disease (ARCL2B)	121918375	A/B/C/D/E	G	206	R
06	UniProt	VAR_059073	G	206	W	P5CR1_HUMAN	Disease (ARCL2B)	121918375	A/B/C/D/E	G	206	W
07	UniProt	VAR_067600	G	248	E	P5CR1_HUMAN	Disease (ARCL3B)	281875319	A/B/C/D/E	G	248	E
08	UniProt	VAR_059074	R	251	H	P5CR1_HUMAN	Disease (ARCL3B)	121918378	A/B/C/D/E	R	251	H
09	UniProt	VAR_059075	A	257	T	P5CR1_HUMAN	Disease (ARCL3B)	281875318	A/B/C/D/E	A	257	T
10	UniProt	VAR_059076	R	266	Q	P5CR1_HUMAN	Disease (ARCL2B)	121918374	A/B/C/D/E	R	266	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P5CR	PS00521	Delta 1-pyrroline-5-carboxylate reductase signature.	P5CR1_HUMAN	224-246	5	A:224-246 B:224-246 C:224-246 D:224-246 E:224-246

Biological Unit 1 (1, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P5CR	PS00521	Delta 1-pyrroline-5-carboxylate reductase signature.	P5CR1_HUMAN	224-246	10	A:224-246 B:224-246 C:224-246 D:224-246 E:224-246

Asymmetric Unit (7, 35)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.3a	ENST00000329875	3a	ENSE00001511592	chr17:79894968-79894624	345	P5CR1_HUMAN	1-23	23	5	A:1-23 B:1-23 C:1-23 D:1-23 E:1-23	23 23 23 23 23
1.4	ENST00000329875	4	ENSE00001321886	chr17:79894069-79893999	71	P5CR1_HUMAN	23-46	24	5	A:23-46 B:23-46 C:23-46 D:23-46 E:23-46	24 24 24 24 24
1.5	ENST00000329875	5	ENSE00001609318	chr17:79893392-79893213	180	P5CR1_HUMAN	47-106	60	5	A:47-106 B:47-106 C:47-106 D:47-106 E:47-106	60 60 60 60 60
1.6	ENST00000329875	6	ENSE00001295081	chr17:79893023-79892802	222	P5CR1_HUMAN	107-180	74	5	A:107-180 B:107-180 C:107-180 D:107-180 E:107-180	74 74 74 74 74
1.7	ENST00000329875	7	ENSE00001652123	chr17:79892621-79892529	93	P5CR1_HUMAN	181-211	31	5	A:181-211 B:181-211 C:181-211 D:181-211 E:181-211	31 31 31 31 31
1.8b	ENST00000329875	8b	ENSE00001731739	chr17:79892365-79892202	164	P5CR1_HUMAN	212-266	55	5	A:212-266 B:212-266 C:212-266 D:212-266 E:212-266	55 55 55 55 55
1.9b	ENST00000329875	9b	ENSE00001665866	chr17:79891252-79890269	984	P5CR1_HUMAN	266-319	54	5	A:266-271 B:266-273 C:266-275 D:266-271 E:266-272	6 8 10 6 7

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:272
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:272
                             1                                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269  
          P5CR1_HUMAN     - -MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSM 271
               SCOP domains d2izza1 A:0-164 automated matches                                                                                                                                    d2izza2 A:165-271 automated matches                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...hhh.eeee.....hhhhhhhhhhh.eee.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W----------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: A:224-246   ------------------------- PROSITE
           Transcript 1 (1) -Exon 1.3a  PDB: A:1-23 -----------------------Exon 1.5  PDB: A:47-106 UniProt: 47-106                     Exon 1.6  PDB: A:107-180 UniProt: 107-180                                 Exon 1.7  PDB: A:181-211       Exon 1.8b  PDB: A:212-266 UniProt: 212-266             ----- Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.4  PDB: A:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.9b   Transcript 1 (2)
                 2izz A   0 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSM 271
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269

Chain B from PDB  Type:PROTEIN  Length:279
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:279
                                  1                                                                                                                                                                                                                                                                                
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264         
          P5CR1_HUMAN     - ------MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMAD 273
               SCOP domains d2izzb1 B:-5-164 automated matches                                                                                                                                        d2izzb2 B:165-273 automated matches                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..hhhhhhhhhhhhhh...hhh.eeee.....hhhhhhhhhhh.eee.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: B:224-246   --------------------------- PROSITE
           Transcript 1 (1) ------Exon 1.3a  PDB: B:1-23 -----------------------Exon 1.5  PDB: B:47-106 UniProt: 47-106                     Exon 1.6  PDB: B:107-180 UniProt: 107-180                                 Exon 1.7  PDB: B:181-211       Exon 1.8b  PDB: B:212-266 UniProt: 212-266             ------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------Exon 1.4  PDB: B:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.9b     Transcript 1 (2)
                 2izz B  -5 NLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMAD 273
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain C from PDB  Type:PROTEIN  Length:276
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:276
                             1                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269      
          P5CR1_HUMAN     - -MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
               SCOP domains d2izzc1 C:0-164 automated matches                                                                                                                                    d2izzc2 C:165-275 automated matches                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...hhh.eeee.....hhhhhhhhhhh.eee.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W--------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: C:224-246   ----------------------------- PROSITE
           Transcript 1 (1) -Exon 1.3a  PDB: C:1-23 -----------------------Exon 1.5  PDB: C:47-106 UniProt: 47-106                     Exon 1.6  PDB: C:107-180 UniProt: 107-180                                 Exon 1.7  PDB: C:181-211       Exon 1.8b  PDB: C:212-266 UniProt: 212-266             --------- Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.4  PDB: C:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  Transcript 1 (2)
                 2izz C   0 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQE 275
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269

Chain D from PDB  Type:PROTEIN  Length:276
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:276
                                 1                                                                                                                                                                                                                                                                              
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265      
          P5CR1_HUMAN     - -----MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSM 271
               SCOP domains d2izzd1 D:-4-164 automated matches                                                                                                                                       d2izzd2 D:165-271 automated matches                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhhh...hhh.eeee.....hhhhhhhhhhh.eee.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W----------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: D:224-246   ------------------------- PROSITE
           Transcript 1 (1) -----Exon 1.3a  PDB: D:1-23 -----------------------Exon 1.5  PDB: D:47-106 UniProt: 47-106                     Exon 1.6  PDB: D:107-180 UniProt: 107-180                                 Exon 1.7  PDB: D:181-211       Exon 1.8b  PDB: D:212-266 UniProt: 212-266             ----- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.4  PDB: D:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.9b   Transcript 1 (2)
                 2izz D  -4 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSM 271
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265

Chain E from PDB  Type:PROTEIN  Length:272
 aligned with P5CR1_HUMAN | P32322 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:272
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270  
          P5CR1_HUMAN     1 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMA 272
               SCOP domains d2izze1 E:1-164 automated matches                                                                                                                                   d2izze2 E:165-272 automated matches                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhh...hhh.eeee.....hhhhhhhhhhh.eee.hhhhhhhhh.eeee..hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh.....eeeeee.hhhhhhh.eeeeeee....hhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------T---------V----------------R-----------------------------------------E--H-----T--------Q------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------W------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P5CR  PDB: E:224-246   -------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: E:1-23 -----------------------Exon 1.5  PDB: E:47-106 UniProt: 47-106                     Exon 1.6  PDB: E:107-180 UniProt: 107-180                                 Exon 1.7  PDB: E:181-211       Exon 1.8b  PDB: E:212-266 UniProt: 212-266             ------ Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.4  PDB: E:23-46  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.9b    Transcript 1 (2)
                 2izz E   1 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQSMA 272
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like (119)

Family: automated matches (50)

Protein domain: automated matches (50)

Human (Homo sapiens) [TaxId: 9606] (13)

1a	d2izza2	A:165-271
1b	d2izzb2	B:165-273
1c	d2izzc2	C:165-275
1d	d2izzd2	D:165-271
1e	d2izze2	E:165-272

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Human (Homo sapiens) [TaxId: 9606] (32)

2a	d2izza1	A:0-164
2b	d2izzb1	B:-5-164
2c	d2izzc1	C:0-164
2d	d2izzd1	D:-4-164
2e	d2izze1	E:1-164

(no "CATH Domain" information available for 2IZZ)

(no "Pfam Domain" information available for 2IZZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E (P5CR1_HUMAN | P32322)

molecular function
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004735	pyrroline-5-carboxylate reductase activity	Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
biological process
	GO:0055129	L-proline biosynthetic process	The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0034599	cellular response to oxidative stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:1903206	negative regulation of hydrogen peroxide-induced cell death	Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-induced cell death.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006561	proline biosynthetic process	The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
	GO:0051881	regulation of mitochondrial membrane potential	Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	2izz
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	1.5.1.2
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	P5CR1_HUMAN \| P32322	:	2ger 2gr9 2gra 5uat 5uau 5uav 5uaw 5uax

(no "Related Entries Specified in the PDB File" available for 2IZZ)

Description

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Ligands, Modified Residues, Ions (2, 12)

Sites (12, 12)

SS Bonds (0, 0)

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Exons (7, 35)

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