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2GR9
Biol. Unit 7
Info
Asym.Unit (234 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (49 KB)
Biol.Unit 6 (94 KB)
Biol.Unit 7 (93 KB)
Biol.Unit 8 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P5CR COMPLEXED WITH NADH
Authors
:
Z. Meng, Z. Lou, Z. Liu, Z. Rao
Date
:
23 Apr 06 (Deposition) - 03 Oct 06 (Release) - 06 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: D,E (1x)
Biol. Unit 7: A,C (1x)
Biol. Unit 8: B (2x)
Keywords
:
Crystal Strucutre, Human Pyrroline-5-Carboxylate Reductase, Nadh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Meng, Z. Lou, Z. Liu, M. Li, X. Zhao, M. Bartlam, Z. Rao
Crystal Structure Of Human Pyrroline-5-Carboxylate Reductas
J. Mol. Biol. V. 359 1364 2006
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLUTAMIC ACID (GLUa)
1b: GLUTAMIC ACID (GLUb)
1c: GLUTAMIC ACID (GLUc)
1d: GLUTAMIC ACID (GLUd)
1e: GLUTAMIC ACID (GLUe)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
2d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
2e: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
2
NAI
1
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:129 , GLU A:130 , SER A:154 , GLY A:157 , PHE A:158 , LEU A:218 , HIS A:219 , GLU A:1301 , HOH A:1408 , HOH A:1412 , HOH A:1431 , HOH A:1435 , ARG C:204 , GLN C:208 , HOH C:3395
BINDING SITE FOR RESIDUE NAI A 1300
2
AC2
SOFTWARE
NAI A:1300 , HOH A:1401 , HOH A:1408 , HOH A:1429
BINDING SITE FOR RESIDUE GLU A 1301
3
AC5
SOFTWARE
ARG A:204 , LEU A:205 , GLN A:208 , LEU A:211 , ARG C:129 , GLU C:130 , SER C:154 , SER C:155 , GLY C:157 , PHE C:158 , LEU C:218 , HIS C:219 , GLU C:3301 , HOH C:3408
BINDING SITE FOR RESIDUE NAI C 3300
4
AC6
SOFTWARE
ARG C:129 , NAI C:3300
BINDING SITE FOR RESIDUE GLU C 3301
[
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SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_059068 (R119G, chain A/C, )
02: VAR_059069 (R119H, chain A/C, )
03: VAR_059070 (A179T, chain A/C, )
04: VAR_059071 (A189V, chain A/C, )
05: VAR_059072 (G206R, chain A/C, )
06: VAR_059073 (G206W, chain A/C, )
07: VAR_067600 (G248E, chain A/C, )
08: VAR_059074 (R251H, chain A/C, )
09: VAR_059075 (A257T, chain A/C, )
10: VAR_059076 (R266Q, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_059068
R
119
G
P5CR1_HUMAN
Disease (ARCL2B)
---
A/C
R
119
G
02
UniProt
VAR_059069
R
119
H
P5CR1_HUMAN
Disease (ARCL2B)
121918377
A/C
R
119
H
03
UniProt
VAR_059070
A
179
T
P5CR1_HUMAN
Disease (ARCL2B)
---
A/C
A
179
T
04
UniProt
VAR_059071
A
189
V
P5CR1_HUMAN
Polymorphism
---
A/C
A
189
V
05
UniProt
VAR_059072
G
206
R
P5CR1_HUMAN
Disease (ARCL2B)
121918375
A/C
G
206
R
06
UniProt
VAR_059073
G
206
W
P5CR1_HUMAN
Disease (ARCL2B)
---
A/C
G
206
W
07
UniProt
VAR_067600
G
248
E
P5CR1_HUMAN
Disease (ARCL3B)
281875319
A/C
G
248
E
08
UniProt
VAR_059074
R
251
H
P5CR1_HUMAN
Disease (ARCL3B)
---
A/C
R
251
H
09
UniProt
VAR_059075
A
257
T
P5CR1_HUMAN
Disease (ARCL3B)
281875318
A/C
A
257
T
10
UniProt
VAR_059076
R
266
Q
P5CR1_HUMAN
Disease (ARCL2B)
---
A/C
R
266
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: P5CR (A:224-246,C:224-246)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P5CR
PS00521
Delta 1-pyrroline-5-carboxylate reductase signature.
P5CR1_HUMAN
224-246
2
A:224-246
-
C:224-246
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d2gr9a2 (A:165-275)
1b: SCOP_d2gr9b2 (B:165-275)
1c: SCOP_d2gr9c2 (C:165-275)
1d: SCOP_d2gr9d2 (D:165-275)
1e: SCOP_d2gr9e2 (E:165-275)
2a: SCOP_d2gr9a1 (A:-1-164)
2b: SCOP_d2gr9b1 (B:-1-164)
2c: SCOP_d2gr9c1 (C:-1-164)
2d: SCOP_d2gr9d1 (D:-1-164)
2e: SCOP_d2gr9e1 (E:-1-164)
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(
)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d2gr9a2
A:165-275
1b
d2gr9b2
B:165-275
1c
d2gr9c2
C:165-275
1d
d2gr9d2
D:165-275
1e
d2gr9e2
E:165-275
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Human (Homo sapiens) [TaxId: 9606]
(32)
2a
d2gr9a1
A:-1-164
2b
d2gr9b1
B:-1-164
2c
d2gr9c1
C:-1-164
2d
d2gr9d1
D:-1-164
2e
d2gr9e1
E:-1-164
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (47 KB)
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Biol.Unit 3 (48 KB)
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Biol.Unit 4 (49 KB)
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Biol.Unit 5 (49 KB)
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