2GDR - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A BACTERIAL GLUTATHIONE TRANSFERASE

Authors :   E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. P. Murphy

Date :   16 Mar 06 (Deposition) - 22 Aug 06 (Release) - 14 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Protein Homodimer, Each Monomer Contains Two Domains, N-Term Domain Is Mixed Beta Sheets And Alpha Helices, C-Term Domain Is Alpha Helical, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. Murphy
Structures Of Ternary Complexes Of Bphk, A Bacterial Glutathione S-Transferase That Reductively Dechlorinates Polychlorinated Biphenyl Metabolites.
J. Biol. Chem. V. 281 30933 2006
PubMed-ID: 16920719 | Reference-DOI: 10.1074/JBC.M603125200

Molecule 1 - GLUTATHIONE S-TRANSFERASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	BPHK
	Organism Scientific	:	BURKHOLDERIA XENOVORANS
	Organism Taxid	:	266265
	Strain	:	LB400

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	GSH	9	Ligand/Ion	GLUTATHIONE

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	GSH	3	Ligand/Ion	GLUTATHIONE

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	GSH	3	Ligand/Ion	GLUTATHIONE

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	GSH	3	Ligand/Ion	GLUTATHIONE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:9 , CYS A:10 , LEU A:32 , LYS A:35 , TYR A:51 , VAL A:52 , GLU A:65 , GLY A:66 , HIS A:106 , LYS A:107 , HOH A:226 , HOH A:228 , ASN B:99 , SER B:103 , GLU B:104	BINDING SITE FOR RESIDUE GSH A 224
2	AC2	SOFTWARE	ASN A:99 , SER A:103 , GLU A:104 , CYS B:10 , LEU B:32 , LYS B:35 , TYR B:51 , VAL B:52 , GLU B:65 , GLY B:66 , HIS B:106 , LYS B:107 , GSH B:225 , HOH B:230 , HOH B:236 , HOH B:239	BINDING SITE FOR RESIDUE GSH B 224
3	AC3	SOFTWARE	PRO B:7 , GLY B:8 , ALA B:9 , HIS B:106 , LYS B:107 , SER B:110 , PHE B:113 , TRP B:164 , GSH B:224	BINDING SITE FOR RESIDUE GSH B 225
4	AC4	SOFTWARE	CYS C:10 , LEU C:32 , LYS C:35 , TYR C:51 , VAL C:52 , GLU C:65 , GLY C:66 , HIS C:106 , HOH C:232 , HOH C:235 , HOH C:238 , ASN D:99 , SER D:103 , GLU D:104	BINDING SITE FOR RESIDUE GSH C 224
5	AC5	SOFTWARE	ASN C:99 , SER C:103 , GLU C:104 , CYS D:10 , LEU D:32 , LYS D:35 , TYR D:51 , VAL D:52 , GLU D:65 , GLY D:66 , HIS D:106 , LYS D:107 , GSH D:225 , HOH D:226 , HOH D:231	BINDING SITE FOR RESIDUE GSH D 224
6	AC6	SOFTWARE	ALA D:9 , LEU D:32 , HIS D:106 , SER D:110 , PHE D:113 , TRP D:164 , TYR D:167 , GSH D:224	BINDING SITE FOR RESIDUE GSH D 225
7	AC7	SOFTWARE	CYS E:10 , LEU E:32 , LYS E:35 , TYR E:51 , VAL E:52 , GLU E:65 , GLY E:66 , HOH E:225 , HOH E:230 , ASN F:99 , SER F:103 , GLU F:104	BINDING SITE FOR RESIDUE GSH E 224
8	AC8	SOFTWARE	ASN E:99 , SER E:103 , GLU E:104 , ALA F:9 , CYS F:10 , LEU F:32 , LYS F:35 , TYR F:51 , VAL F:52 , GLU F:65 , GLY F:66 , HIS F:106 , LYS F:107 , GSH F:225 , HOH F:242 , HOH F:250 , HOH F:251	BINDING SITE FOR RESIDUE GSH F 224
9	AC9	SOFTWARE	PRO F:7 , GLY F:8 , HIS F:106 , SER F:110 , PHE F:113 , TYR F:167 , GSH F:224	BINDING SITE FOR RESIDUE GSH F 225

(no "SS Bond" information available for 2GDR)

Asymmetric Unit

No.	Residues
1	Val A:52	-	Pro A:53
2	Val B:52	-	Pro B:53
3	Val C:52	-	Pro C:53
4	Val D:52	-	Pro D:53
5	Val E:52	-	Pro E:53
6	Val F:52	-	Pro F:53

(no "SAP(SNP)/Variant" information available for 2GDR)

(no "PROSITE Motif" information available for 2GDR)

(no "Exon" information available for 2GDR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:202
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
               SCOP domains d2gdra1 A:1-80 automated matches                                                d2gdra2 A:81-202 automated matches                                                                                         SCOP domains
               CATH domains 2gdrA01 A:1-82,A:189-202 Glutaredoxin                                             2gdrA02 A:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrA01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhh..eeeee............hhhhh.......eee.....eeehhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr A   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:201
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
               SCOP domains d2gdrb1 B:1-80 automated matches                                                d2gdrb2 B:81-201 automated matches                                                                                        SCOP domains
               CATH domains 2gdrB01 B:1-82,B:189-201 Glutaredoxin                                             2gdrB02 B:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrB01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhh....eeeeee....ee....hhhhhh......eee.....eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr B   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain C from PDB  Type:PROTEIN  Length:202
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
               SCOP domains d2gdrc1 C:1-80 automated matches                                                d2gdrc2 C:81-202 automated matches                                                                                         SCOP domains
               CATH domains 2gdrC01 C:1-82,C:189-202 Glutaredoxin                                             2gdrC02 C:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrC01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhh...eeee............hhhhhh......eee.....eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr C   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:201
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
               SCOP domains d2gdrd1 D:1-80 automated matches                                                d2gdrd2 D:81-201 automated matches                                                                                        SCOP domains
               CATH domains 2gdrD01 D:1-82,D:189-201 Glutaredoxin                                             2gdrD02 D:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrD01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhh...eeeeee....ee....hhhhhh......eee.....eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr D   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain E from PDB  Type:PROTEIN  Length:202
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
               SCOP domains d2gdre1 E:1-80 automated matches                                                d2gdre2 E:81-202 automated matches                                                                                         SCOP domains
               CATH domains 2gdrE01 E:1-82,E:189-202 Glutaredoxin                                             2gdrE02 E:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrE01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhh...eeeeee....ee....hhhhh.......eee.....eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr E   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLIK 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain F from PDB  Type:PROTEIN  Length:201
 aligned with Q59721_PARXL | Q59721 from UniProtKB/TrEMBL  Length:203

    Alignment length:201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 
         Q59721_PARXL     1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEINPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
               SCOP domains d2gdrf1 F:1-80 automated matches                                                d2gdrf2 F:81-201 automated matches                                                                                        SCOP domains
               CATH domains 2gdrF01 F:1-82,F:189-201 Glutaredoxin                                             2gdrF02 F:83-188  [code=1.20.1050.10, no name defined]                                                    2gdrF01       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhh...eeeeee....ee....hhhhh.......eee.....eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gdr F   1 MKLYYSPGACSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPSLQAFQGRVGGREAVQSALRAEGLI 201
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: GST C-terminal domain-like (353)

Superfamily: GST C-terminal domain-like (353)

Family: automated matches (86)

Protein domain: automated matches (86)

Burkholderia xenovorans [TaxId: 266265] (2)

1a	d2gdra2	A:81-202
1b	d2gdrb2	B:81-201
1c	d2gdrc2	C:81-202
1d	d2gdrd2	D:81-201
1e	d2gdre2	E:81-202
1f	d2gdrf2	F:81-201

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Burkholderia xenovorans [TaxId: 266265] (2)

2a	d2gdra1	A:1-80
2b	d2gdrb1	B:1-80
2c	d2gdrc1	C:1-80
2d	d2gdrd1	D:1-80
2e	d2gdre1	E:1-80
2f	d2gdrf1	F:1-80

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400. (2)

1a	2gdrA01	A:1-82,A:189-202
1b	2gdrC01	C:1-82,C:189-202
1c	2gdrE01	E:1-82,E:189-202
1d	2gdrB01	B:1-82,B:189-201
1e	2gdrD01	D:1-82,D:189-201
1f	2gdrF01	F:1-82,F:189-201

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 (267)

Homologous Superfamily: [code=1.20.1050.10, no name defined] (249)

Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400. (2)

2a	2gdrA02	A:83-188
2b	2gdrB02	B:83-188
2c	2gdrC02	C:83-188
2d	2gdrD02	D:83-188
2e	2gdrE02	E:83-188
2f	2gdrF02	F:83-188

(no "Pfam Domain" information available for 2GDR)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q59721_PARXL | Q59721)

molecular function
	GO:0004364		glutathione transferase activity		Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
		Val A:52 - Pro A:53	[ RasMol ]
		Val B:52 - Pro B:53	[ RasMol ]
		Val C:52 - Pro C:53	[ RasMol ]
		Val D:52 - Pro D:53	[ RasMol ]
		Val E:52 - Pro E:53	[ RasMol ]
		Val F:52 - Pro F:53	[ RasMol ]

Biological Units
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Access by PDB/NDB ID
	2gdr
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		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q59721_PARXL \| Q59721
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	Q59721_PARXL \| Q59721	:	2dsa

1f2e	GLUTATHIONE TRANSFERASE FROM S. PAUCIMOBILIS BOUND TO GSH
1n2a	GLUTATHIONE TRANSFERASE FROM E. COLI BOUND TO GSO
1pmt	GLUTATHIONE TRANSFERASE FROM P. MIRABILIS BOUND TO GSH
2gdh	GLUTATHIONE TRANSFERASE FROM B. XENOVORANS LB400 (BPHK) BOUND TO GSH AND HOPDA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 12)

CATH Domains (2, 12)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File