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2GDR
Biol. Unit 1
Info
Asym.Unit (203 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BACTERIAL GLUTATHIONE TRANSFERASE
Authors
:
E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. P. Murphy
Date
:
16 Mar 06 (Deposition) - 22 Aug 06 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Protein Homodimer, Each Monomer Contains Two Domains, N-Term Domain Is Mixed Beta Sheets And Alpha Helices, C-Term Domain Is Alpha Helical, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. Murphy
Structures Of Ternary Complexes Of Bphk, A Bacterial Glutathione S-Transferase That Reductively Dechlorinates Polychlorinated Biphenyl Metabolites.
J. Biol. Chem. V. 281 30933 2006
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
1e: GLUTATHIONE (GSHe)
1f: GLUTATHIONE (GSHf)
1g: GLUTATHIONE (GSHg)
1h: GLUTATHIONE (GSHh)
1i: GLUTATHIONE (GSHi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
3
Ligand/Ion
GLUTATHIONE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:9 , CYS A:10 , LEU A:32 , LYS A:35 , TYR A:51 , VAL A:52 , GLU A:65 , GLY A:66 , HIS A:106 , LYS A:107 , HOH A:226 , HOH A:228 , ASN B:99 , SER B:103 , GLU B:104
BINDING SITE FOR RESIDUE GSH A 224
2
AC2
SOFTWARE
ASN A:99 , SER A:103 , GLU A:104 , CYS B:10 , LEU B:32 , LYS B:35 , TYR B:51 , VAL B:52 , GLU B:65 , GLY B:66 , HIS B:106 , LYS B:107 , GSH B:225 , HOH B:230 , HOH B:236 , HOH B:239
BINDING SITE FOR RESIDUE GSH B 224
3
AC3
SOFTWARE
PRO B:7 , GLY B:8 , ALA B:9 , HIS B:106 , LYS B:107 , SER B:110 , PHE B:113 , TRP B:164 , GSH B:224
BINDING SITE FOR RESIDUE GSH B 225
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2gdra2 (A:81-202)
1b: SCOP_d2gdrb2 (B:81-201)
1c: SCOP_d2gdrc2 (C:81-202)
1d: SCOP_d2gdrd2 (D:81-201)
1e: SCOP_d2gdre2 (E:81-202)
1f: SCOP_d2gdrf2 (F:81-201)
2a: SCOP_d2gdra1 (A:1-80)
2b: SCOP_d2gdrb1 (B:1-80)
2c: SCOP_d2gdrc1 (C:1-80)
2d: SCOP_d2gdrd1 (D:1-80)
2e: SCOP_d2gdre1 (E:1-80)
2f: SCOP_d2gdrf1 (F:1-80)
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)
(
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)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Burkholderia xenovorans [TaxId: 266265]
(2)
1a
d2gdra2
A:81-202
1b
d2gdrb2
B:81-201
1c
d2gdrc2
C:81-202
1d
d2gdrd2
D:81-201
1e
d2gdre2
E:81-202
1f
d2gdrf2
F:81-201
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Burkholderia xenovorans [TaxId: 266265]
(2)
2a
d2gdra1
A:1-80
2b
d2gdrb1
B:1-80
2c
d2gdrc1
C:1-80
2d
d2gdrd1
D:1-80
2e
d2gdre1
E:1-80
2f
d2gdrf1
F:1-80
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2gdrA01 (A:1-82,A:189-202)
1b: CATH_2gdrC01 (C:1-82,C:189-202)
1c: CATH_2gdrE01 (E:1-82,E:189-202)
1d: CATH_2gdrB01 (B:1-82,B:189-201)
1e: CATH_2gdrD01 (D:1-82,D:189-201)
1f: CATH_2gdrF01 (F:1-82,F:189-201)
2a: CATH_2gdrA02 (A:83-188)
2b: CATH_2gdrB02 (B:83-188)
2c: CATH_2gdrC02 (C:83-188)
2d: CATH_2gdrD02 (D:83-188)
2e: CATH_2gdrE02 (E:83-188)
2f: CATH_2gdrF02 (F:83-188)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
1a
2gdrA01
A:1-82,A:189-202
1b
2gdrC01
C:1-82,C:189-202
1c
2gdrE01
E:1-82,E:189-202
1d
2gdrB01
B:1-82,B:189-201
1e
2gdrD01
D:1-82,D:189-201
1f
2gdrF01
F:1-82,F:189-201
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
2a
2gdrA02
A:83-188
2b
2gdrB02
B:83-188
2c
2gdrC02
C:83-188
2d
2gdrD02
D:83-188
2e
2gdrE02
E:83-188
2f
2gdrF02
F:83-188
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (203 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
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