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2GDR
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BACTERIAL GLUTATHIONE TRANSFERASE
Authors
:
E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. P. Murphy
Date
:
16 Mar 06 (Deposition) - 22 Aug 06 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Protein Homodimer, Each Monomer Contains Two Domains, N-Term Domain Is Mixed Beta Sheets And Alpha Helices, C-Term Domain Is Alpha Helical, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. Murphy
Structures Of Ternary Complexes Of Bphk, A Bacterial Glutathione S-Transferase That Reductively Dechlorinates Polychlorinated Biphenyl Metabolites.
J. Biol. Chem. V. 281 30933 2006
[
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
1e: GLUTATHIONE (GSHe)
1f: GLUTATHIONE (GSHf)
1g: GLUTATHIONE (GSHg)
1h: GLUTATHIONE (GSHh)
1i: GLUTATHIONE (GSHi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
9
Ligand/Ion
GLUTATHIONE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:9 , CYS A:10 , LEU A:32 , LYS A:35 , TYR A:51 , VAL A:52 , GLU A:65 , GLY A:66 , HIS A:106 , LYS A:107 , HOH A:226 , HOH A:228 , ASN B:99 , SER B:103 , GLU B:104
BINDING SITE FOR RESIDUE GSH A 224
2
AC2
SOFTWARE
ASN A:99 , SER A:103 , GLU A:104 , CYS B:10 , LEU B:32 , LYS B:35 , TYR B:51 , VAL B:52 , GLU B:65 , GLY B:66 , HIS B:106 , LYS B:107 , GSH B:225 , HOH B:230 , HOH B:236 , HOH B:239
BINDING SITE FOR RESIDUE GSH B 224
3
AC3
SOFTWARE
PRO B:7 , GLY B:8 , ALA B:9 , HIS B:106 , LYS B:107 , SER B:110 , PHE B:113 , TRP B:164 , GSH B:224
BINDING SITE FOR RESIDUE GSH B 225
4
AC4
SOFTWARE
CYS C:10 , LEU C:32 , LYS C:35 , TYR C:51 , VAL C:52 , GLU C:65 , GLY C:66 , HIS C:106 , HOH C:232 , HOH C:235 , HOH C:238 , ASN D:99 , SER D:103 , GLU D:104
BINDING SITE FOR RESIDUE GSH C 224
5
AC5
SOFTWARE
ASN C:99 , SER C:103 , GLU C:104 , CYS D:10 , LEU D:32 , LYS D:35 , TYR D:51 , VAL D:52 , GLU D:65 , GLY D:66 , HIS D:106 , LYS D:107 , GSH D:225 , HOH D:226 , HOH D:231
BINDING SITE FOR RESIDUE GSH D 224
6
AC6
SOFTWARE
ALA D:9 , LEU D:32 , HIS D:106 , SER D:110 , PHE D:113 , TRP D:164 , TYR D:167 , GSH D:224
BINDING SITE FOR RESIDUE GSH D 225
7
AC7
SOFTWARE
CYS E:10 , LEU E:32 , LYS E:35 , TYR E:51 , VAL E:52 , GLU E:65 , GLY E:66 , HOH E:225 , HOH E:230 , ASN F:99 , SER F:103 , GLU F:104
BINDING SITE FOR RESIDUE GSH E 224
8
AC8
SOFTWARE
ASN E:99 , SER E:103 , GLU E:104 , ALA F:9 , CYS F:10 , LEU F:32 , LYS F:35 , TYR F:51 , VAL F:52 , GLU F:65 , GLY F:66 , HIS F:106 , LYS F:107 , GSH F:225 , HOH F:242 , HOH F:250 , HOH F:251
BINDING SITE FOR RESIDUE GSH F 224
9
AC9
SOFTWARE
PRO F:7 , GLY F:8 , HIS F:106 , SER F:110 , PHE F:113 , TYR F:167 , GSH F:224
BINDING SITE FOR RESIDUE GSH F 225
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2gdra2 (A:81-202)
1b: SCOP_d2gdrb2 (B:81-201)
1c: SCOP_d2gdrc2 (C:81-202)
1d: SCOP_d2gdrd2 (D:81-201)
1e: SCOP_d2gdre2 (E:81-202)
1f: SCOP_d2gdrf2 (F:81-201)
2a: SCOP_d2gdra1 (A:1-80)
2b: SCOP_d2gdrb1 (B:1-80)
2c: SCOP_d2gdrc1 (C:1-80)
2d: SCOP_d2gdrd1 (D:1-80)
2e: SCOP_d2gdre1 (E:1-80)
2f: SCOP_d2gdrf1 (F:1-80)
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Classes
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)
(
)
Folds
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Burkholderia xenovorans [TaxId: 266265]
(2)
1a
d2gdra2
A:81-202
1b
d2gdrb2
B:81-201
1c
d2gdrc2
C:81-202
1d
d2gdrd2
D:81-201
1e
d2gdre2
E:81-202
1f
d2gdrf2
F:81-201
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Burkholderia xenovorans [TaxId: 266265]
(2)
2a
d2gdra1
A:1-80
2b
d2gdrb1
B:1-80
2c
d2gdrc1
C:1-80
2d
d2gdrd1
D:1-80
2e
d2gdre1
E:1-80
2f
d2gdrf1
F:1-80
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2gdrA01 (A:1-82,A:189-202)
1b: CATH_2gdrC01 (C:1-82,C:189-202)
1c: CATH_2gdrE01 (E:1-82,E:189-202)
1d: CATH_2gdrB01 (B:1-82,B:189-201)
1e: CATH_2gdrD01 (D:1-82,D:189-201)
1f: CATH_2gdrF01 (F:1-82,F:189-201)
2a: CATH_2gdrA02 (A:83-188)
2b: CATH_2gdrB02 (B:83-188)
2c: CATH_2gdrC02 (C:83-188)
2d: CATH_2gdrD02 (D:83-188)
2e: CATH_2gdrE02 (E:83-188)
2f: CATH_2gdrF02 (F:83-188)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
1a
2gdrA01
A:1-82,A:189-202
1b
2gdrC01
C:1-82,C:189-202
1c
2gdrE01
E:1-82,E:189-202
1d
2gdrB01
B:1-82,B:189-201
1e
2gdrD01
D:1-82,D:189-201
1f
2gdrF01
F:1-82,F:189-201
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
2a
2gdrA02
A:83-188
2b
2gdrB02
B:83-188
2c
2gdrC02
C:83-188
2d
2gdrD02
D:83-188
2e
2gdrE02
E:83-188
2f
2gdrF02
F:83-188
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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