2G0E - JenaLib

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF QACR MULTIDRUG TRANSCRIPTIONAL REGULATOR BOUND TO TRIVALENT AND BIVALENT DIAMIDINE DRUGS

Authors :   J. T. Schuman

Date :   12 Feb 06 (Deposition) - 08 Apr 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.88

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)
Biol. Unit 3: A (4x),B (4x),D (4x),E (4x)

Keywords :   Helix-Turn-Helix, Transciptional Repressor, Trivalent, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. T. Schuman, K. M. Hardie, M. H. Brown, R. A. Skurray, R. G. Brennan
Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs
To Be Published
PubMed: search

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR QACR
	Chains	:	A, B, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	DH5A
	Expression System Taxid	:	562
	Gene	:	QACR
	Organism Scientific	:	STAPHYLOCOCCUS HAEMOLYTICUS
	Organism Taxid	:	1283

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A		D
Biological Unit 2 (1x)	:		B		E
Biological Unit 3 (4x)	:	A (4x)	B (4x)	D (4x)	E (4x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 22)

No.	Name	Count	Type	Full Name
1	CGQ	1	Ligand/Ion	3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM
2	SO4	21	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	CGQ	1	Ligand/Ion	3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM
2	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	CGQ	-1	Ligand/Ion	3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM
2	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 48)

No.	Name	Count	Type	Full Name
1	CGQ	-1	Ligand/Ion	3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM
2	SO4	48	Ligand/Ion	SULFATE ION

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU D:54 , GLU D:57 , GLN D:64 , THR D:89 , TYR D:92 , TYR D:93 , LEU D:119 , TYR D:123 , HOH D:3034	BINDING SITE FOR RESIDUE CGQ D 3025
02	AC2	SOFTWARE	SER D:35 , LYS D:36 , LYS E:60	BINDING SITE FOR RESIDUE SO4 D 699
03	AC3	SOFTWARE	LYS D:36 , TYR D:40 , ASP E:5 , LYS E:6	BINDING SITE FOR RESIDUE SO4 E 799
04	AC4	SOFTWARE	LYS D:4 , TYR D:41 , HIS D:42	BINDING SITE FOR RESIDUE SO4 D 299
05	AC5	SOFTWARE	THR E:24 , THR E:25 , GLY E:26 , LYS E:36	BINDING SITE FOR RESIDUE SO4 E 900
06	AC6	SOFTWARE	THR B:24 , THR B:25 , GLY B:26	BINDING SITE FOR RESIDUE SO4 B 270
07	AC7	SOFTWARE	LYS E:36 , TYR E:40 , THR E:45 , LYS E:46 , GLU E:47	BINDING SITE FOR RESIDUE SO4 E 249
08	AC8	SOFTWARE	TYR B:20 , LYS B:46 , GLU B:105 , TYR B:106	BINDING SITE FOR RESIDUE SO4 B 999
09	AC9	SOFTWARE	HIS D:128 , LYS D:132 , ASN D:146	BINDING SITE FOR RESIDUE SO4 D 801
10	BC1	SOFTWARE	ASN D:2 , LEU D:3 , LYS D:4 , ASN D:38 , HIS D:42	BINDING SITE FOR RESIDUE SO4 D 279
11	BC2	SOFTWARE	HIS E:128 , LYS E:132	BINDING SITE FOR RESIDUE SO4 E 239
12	BC3	SOFTWARE	ASN D:2 , ASP D:5 , LYS D:6	BINDING SITE FOR RESIDUE SO4 D 599
13	BC4	SOFTWARE	THR B:25 , LYS B:46	BINDING SITE FOR RESIDUE SO4 B 899
14	BC5	SOFTWARE	THR D:23 , THR D:24 , THR D:25 , LYS D:46	BINDING SITE FOR RESIDUE SO4 D 800
15	BC6	SOFTWARE	LEU E:8 , LYS E:12 , ILE E:53 , ILE E:56 , GLU E:57	BINDING SITE FOR RESIDUE SO4 E 399
16	BC7	SOFTWARE	LYS E:4 , HIS E:42	BINDING SITE FOR RESIDUE SO4 E 289
17	BC8	SOFTWARE	GLN A:64 , TYR A:91 , GLN B:64 , GLU B:90 , TYR B:91	BINDING SITE FOR RESIDUE SO4 A 199
18	BC9	SOFTWARE	TYR B:107 , ASN D:2	BINDING SITE FOR RESIDUE SO4 B 601
19	CC1	SOFTWARE	GLU B:58 , SER B:59 , GLN B:62 , LYS B:122	BINDING SITE FOR RESIDUE SO4 B 779
20	CC2	SOFTWARE	LEU D:8 , LYS D:12 , ILE D:53 , ILE D:56 , GLU D:57 , LYS D:60	BINDING SITE FOR RESIDUE SO4 D 501
21	CC3	SOFTWARE	GLU B:13 , LYS B:17 , LYS B:30 , GLU B:33	BINDING SITE FOR RESIDUE SO4 B 780
22	CC4	SOFTWARE	GLY D:26 , ASN D:167 , ILE D:168	BINDING SITE FOR RESIDUE SO4 D 220

(no "SS Bond" information available for 2G0E)

(no "Cis Peptide Bond" information available for 2G0E)

(no "SAP(SNP)/Variant" information available for 2G0E)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_TETR_1	PS01081	TetR-type HTH domain signature.	QACR_STAHA	19-49	4	A:19-49 B:19-49 D:19-49 E:19-49

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_TETR_1	PS01081	TetR-type HTH domain signature.	QACR_STAHA	19-49	2	A:19-49 - D:19-49 -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_TETR_1	PS01081	TetR-type HTH domain signature.	QACR_STAHA	19-49	2	- B:19-49 - E:19-49

Biological Unit 3 (1, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_TETR_1	PS01081	TetR-type HTH domain signature.	QACR_STAHA	19-49	16	A:19-49 B:19-49 D:19-49 E:19-49

(no "Exon" information available for 2G0E)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:186
 aligned with QACR_STAHA | P0A0N5 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
           QACR_STAHA     2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
               SCOP domains d2g0ea1 A:2-72 Multidrug binding protein QacR                          d2g0ea2 A:73-187 Multidrug binding protein QacR                                                                     SCOP domains
               CATH domains 2g0eA01 A:2-50 Homeodomain-like                  2g0eA02 A:51-187 Tetracycline Repressor, domain 2                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....hhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------HTH_TETR_1  PDB: A:19-49       ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g0e A   2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with QACR_STAHA | P0A0N5 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
           QACR_STAHA     2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
               SCOP domains d2g0eb1 B:2-72 Multidrug binding protein QacR                          d2g0eb2 B:73-187 Multidrug binding protein QacR                                                                     SCOP domains
               CATH domains 2g0eB01 B:2-50 Homeodomain-like                  2g0eB02 B:51-187 Tetracycline Repressor, domain 2                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------HTH_TETR_1  PDB: B:19-49       ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g0e B   2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain D from PDB  Type:PROTEIN  Length:186
 aligned with QACR_STAHA | P0A0N5 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
           QACR_STAHA     2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
               SCOP domains d2g0ed1 D:2-72 Multidrug binding protein QacR                          d2g0ed2 D:73-187 Multidrug binding protein QacR                                                                     SCOP domains
               CATH domains 2g0eD01 D:2-50 Homeodomain-like                  2g0eD02 D:51-187 Tetracycline Repressor, domain 2                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------HTH_TETR_1  PDB: D:19-49       ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g0e D   2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain E from PDB  Type:PROTEIN  Length:186
 aligned with QACR_STAHA | P0A0N5 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:186
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181      
           QACR_STAHA     2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
               SCOP domains d2g0ee1 E:2-72 Multidrug binding protein QacR                          d2g0ee2 E:73-187 Multidrug binding protein QacR                                                                     SCOP domains
               CATH domains 2g0eE01 E:2-50 Homeodomain-like                  2g0eE02 E:51-187 Tetracycline Repressor, domain 2                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------HTH_TETR_1  PDB: E:19-49       ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g0e E   2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS 187
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: Homeodomain-like (288)

Staphylococcus haemolyticus. Organism_taxid: 1283. (1)

1a	2g0eA01	A:2-50
1b	2g0eB01	B:2-50
1c	2g0eD01	D:2-50
1d	2g0eE01	E:2-50

Topology: Tetracycline Repressor; domain 2 (126)

Homologous Superfamily: Tetracycline Repressor, domain 2 (124)

Staphylococcus haemolyticus. Organism_taxid: 1283. (1)

2a	2g0eA02	A:51-187
2b	2g0eB02	B:51-187
2c	2g0eD02	D:51-187
2d	2g0eE02	E:51-187

(no "Pfam Domain" information available for 2G0E)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E (QACR_STAHA | P0A0N5)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Asymmetric Unit
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	Cis Peptide Bonds
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	2g0e
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 22)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (2, 8)

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