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(-) Description

Title :  OUTER MEMBRANE PROTEIN OMPW
 
Authors :  B. Van Den Berg
Date :  15 Nov 05  (Deposition) - 24 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Outer Membrane Protein, Beta Barrel, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Hong, D. R. Patel, L. K. Tamm, B. Van Den Berg
The Outer Membrane Protein Ompw Forms An Eight-Stranded Beta-Barrel With A Hydrophobic Channel.
J. Biol. Chem. V. 281 7568 2006
PubMed-ID: 16414958  |  Reference-DOI: 10.1074/JBC.M512365200

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN W
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PB22
    Expression System Strain: C43 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: OMPW
    Organism Scientific: ESCHERICHIA COLI K12
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1C8E8Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2GOL3Ligand/IonGLYCEROL
3LDA3Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1C8E5Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2GOL1Ligand/IonGLYCEROL
3LDA1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1C8E2Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2GOL1Ligand/IonGLYCEROL
3LDA1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1C8E1Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2GOL1Ligand/IonGLYCEROL
3LDA1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:31 , ILE A:65 , LEU A:123 , LEU A:128 , VAL A:176BINDING SITE FOR RESIDUE LDA A 301
02AC2SOFTWAREPHE B:31 , LEU B:128 , ALA B:163 , TYR B:165 , LEU B:167 , VAL B:176BINDING SITE FOR RESIDUE LDA B 302
03AC3SOFTWAREPHE C:31 , ILE C:65 , VAL C:76 , PHE C:114 , LEU C:128 , TYR C:165 , VAL C:176BINDING SITE FOR RESIDUE LDA C 303
04AC4SOFTWAREMET A:8 , ALA A:10 , GLY A:11 , PHE A:185 , ALA A:187 , C8E A:402BINDING SITE FOR RESIDUE C8E A 401
05AC5SOFTWARETRP A:148 , C8E A:401BINDING SITE FOR RESIDUE C8E A 402
06AC6SOFTWAREPHE A:96 , TYR A:142 , TYR B:156BINDING SITE FOR RESIDUE C8E A 403
07AC7SOFTWARETYR A:142BINDING SITE FOR RESIDUE C8E A 404
08AC8SOFTWAREALA B:10 , GLY B:11 , SER B:12 , MET C:8 , TRP C:148 , ALA C:187BINDING SITE FOR RESIDUE C8E B 405
09AC9SOFTWARETRP B:148 , ALA B:187 , ALA C:10 , GLY C:11 , THR C:37BINDING SITE FOR RESIDUE C8E C 406
10BC1SOFTWAREPHE A:89 , PHE B:89 , GLY B:90BINDING SITE FOR RESIDUE C8E B 408
11BC2SOFTWAREGLU A:2 , GLU A:5 , PHE A:7 , ASP A:141 , LEU A:143 , ARG A:190BINDING SITE FOR RESIDUE GOL A 200
12BC3SOFTWAREGLU B:2 , GLU B:5 , PHE B:7 , ASP B:141 , LEU B:143 , ARG B:190BINDING SITE FOR RESIDUE GOL B 201
13BC4SOFTWAREGLU C:2 , GLU C:5 , PHE C:7 , MET C:46 , ASP C:141 , LEU C:143 , LEU C:149 , ARG C:190BINDING SITE FOR RESIDUE GOL C 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F1T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F1T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F1T)

(-) Exons   (0, 0)

(no "Exon" information available for 2F1T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1tA00 A:2-192  [c        ode=2.40.160.20, no name defined]                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee....--------...ee..eeeeeeeeeeeee..eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.....ee..eeeeeeeeeeeee....eeeeeeeeee..eeeee.........eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1t A   2 EAGEFFMRAGSATVRPTEG--------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11        |-       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                             20       29                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:183
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1tB00 B:2-192  [c        ode=2.40.160.20, no name defined]                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee....--------...ee..eeeeeeeeeeeee..eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeee.hhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1t B   2 EAGEFFMRAGSATVRPTEG--------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11        |-       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                             20       29                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:183
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1tC00 C:2-192  [c        ode=2.40.160.20, no name defined]                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee....--------...ee..eeeeeeeeeeeee..eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.........eeeeeeeeeeeee....eeeeeeeeee.......................eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1t C   2 EAGEFFMRAGSATVRPTEG--------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11        |-       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                             20       29
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2F1T)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F1T)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (OMPW_ECOLI | P0A915)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  2f1t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        OMPW_ECOLI | P0A915: 2f1v

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