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(-) Description

Title :  OUTER MEMBRANE PROTEIN OMPW
 
Authors :  B. Van Den Berg
Date :  15 Nov 05  (Deposition) - 24 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Biol. Unit 8:  C,D,E  (1x)
Biol. Unit 9:  A,B,F  (1x)
Biol. Unit 10:  B,C  (1x)
Biol. Unit 11:  A (1x),D (1x)
Biol. Unit 12:  E (1x),F (1x)
Keywords :  Outer Membrane Protein Beta Barrel, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Hong, D. R. Patel, L. K. Tamm, B. Van Den Berg
The Outer Membrane Protein Ompw Forms An Eight-Stranded Beta-Barrel With A Hydrophobic Channel.
J. Biol. Chem. V. 281 7568 2006
PubMed-ID: 16414958  |  Reference-DOI: 10.1074/JBC.M512365200

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN W
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PB22
    Expression System Strain: C43 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: OMPW
    Organism Scientific: ESCHERICHIA COLI K12
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F
Biological Unit 7 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)
Biological Unit 8 (1x):   CDE 
Biological Unit 9 (1x): AB   F
Biological Unit 10 (1x):  BC   
Biological Unit 11 (1x): A (1x)  D (1x)  
Biological Unit 12 (1x):     E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 7 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 8 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 9 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 10 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 11 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 12 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:2 , GLU A:5 , PHE A:7 , TYR A:88 , ASP A:141 , LEU A:143 , ARG A:190BINDING SITE FOR RESIDUE GOL A 200
2AC2SOFTWAREGLU F:2 , GLU F:5 , PHE F:7 , TYR F:88 , ASP F:141 , LEU F:143BINDING SITE FOR RESIDUE GOL F 201
3AC3SOFTWAREGLU E:2 , GLU E:5 , PHE E:7 , TYR E:88 , ASP E:141 , LEU E:143 , ARG E:190BINDING SITE FOR RESIDUE GOL E 202
4AC4SOFTWAREGLU C:2 , GLU C:5 , PHE C:7 , TYR C:88 , ASP C:141 , LEU C:143 , ARG C:190BINDING SITE FOR RESIDUE GOL C 203
5AC5SOFTWAREGLU D:2 , GLU D:5 , PHE D:7 , TYR D:88 , ASP D:141 , LEU D:143 , ARG D:190BINDING SITE FOR RESIDUE GOL D 204
6AC6SOFTWAREGLU B:2 , GLU B:5 , PHE B:7 , TYR B:88 , ASP B:141 , LEU B:143 , ARG B:190BINDING SITE FOR RESIDUE GOL B 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F1V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F1V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F1V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F1V)

(-) Exons   (0, 0)

(no "Exon" information available for 2F1V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vA00 A:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v A   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vB00 B:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v B   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vC00 C:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v C   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vD00 D:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v D   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29                                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vE00 E:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v E   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29                                                                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:182
 aligned with OMPW_ECOLI | P0A915 from UniProtKB/Swiss-Prot  Length:212

    Alignment length:191
                                                                                                                                                                                                                       212 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 
           OMPW_ECOLI    23 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f1vF00 F:2-192  [         code=2.40.160.20, no name defined]                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...---------...ee..eeeeeeeeeee....eeeeeeee..eeeeeee...eeeeeeeee..eeeeeee.......eeeeeeeeeeeeeeeeeeehhhhhhh.eeeeee..eeeeeeeeeeeee....eeeeeeeeee..eeeeeeee......eeee...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f1v F   2 EAGEFFMRAGSATVRPTE---------GGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH 192
                                    11       | -       |31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 
                                            19        29
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2F1V)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F1V)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (OMPW_ECOLI | P0A915)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  2f1v
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  OMPW_ECOLI | P0A915
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  OMPW_ECOLI | P0A915
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OMPW_ECOLI | P0A915: 2f1t

(-) Related Entries Specified in the PDB File

2f1t OMPW TRIGONAL CRYSTAL FORM