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(-) Description

Title :  SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF PHD FINGER PROTEIN 20-LIKE 1
 
Authors :  K. Futami, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  30 Mar 07  (Deposition) - 02 Oct 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Tudor Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Futami, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Tudor Domain Of Phd Finger Protein 20-Like 1
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHD FINGER PROTEIN 20-LIKE 1
    Chains: A
    Engineered: YES
    Expression System Plasmid: P060911-17
    Expression System Vector Type: PLASMID
    Fragment: TUDOR DOMAIN
    Gene: PHF20L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2EQU)

(-) Sites  (0, 0)

(no "Site" information available for 2EQU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EQU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EQU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EQU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EQU)

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003953861cENSE00001521553chr8:133787630-133787891262P20L1_HUMAN-00--
1.2bENST000003953862bENSE00001675977chr8:133790038-133790157120P20L1_HUMAN1-28280--
1.4ENST000003953864ENSE00001707399chr8:133806656-133806827172P20L1_HUMAN28-85581A:78-85 (gaps)25
1.5ENST000003953865ENSE00001734578chr8:133806979-13380706385P20L1_HUMAN86-114291A:86-11429
1.6bENST000003953866bENSE00001605264chr8:133811018-13381110689P20L1_HUMAN114-143301A:114-14330
1.6eENST000003953866eENSE00001090009chr8:133811341-13381141878P20L1_HUMAN144-169260--
1.7bENST000003953867bENSE00001089992chr8:133816064-133816277214P20L1_HUMAN170-241721A:144-1518
1.8cENST000003953868cENSE00001090001chr8:133816860-133816985126P20L1_HUMAN241-283430--
1.9dENST000003953869dENSE00002159454chr8:133823291-13382337383P20L1_HUMAN283-310280--
1.10aENST0000039538610aENSE00001731663chr8:133826882-133827134253P20L1_HUMAN311-395850--
1.10dENST0000039538610dENSE00001708692chr8:133829133-133829321189P20L1_HUMAN395-458640--
1.10fENST0000039538610fENSE00001799713chr8:133829584-133829790207P20L1_HUMAN458-527700--
1.11bENST0000039538611bENSE00002182278chr8:133836249-13383630557P20L1_HUMAN527-546200--
1.11hENST0000039538611hENSE00001613063chr8:133837509-133837616108P20L1_HUMAN546-582370--
1.12ENST0000039538612ENSE00001694370chr8:133844480-133844644165P20L1_HUMAN582-637560--
1.13bENST0000039538613bENSE00001666145chr8:133848785-133848966182P20L1_HUMAN637-697610--
1.14aENST0000039538614aENSE00001607526chr8:133849957-133850056100P20L1_HUMAN698-731340--
1.15ENST0000039538615ENSE00001772894chr8:133851632-133851827196P20L1_HUMAN731-796660--
1.16bENST0000039538616bENSE00001622971chr8:133854760-133855120361P20L1_HUMAN796-9161210--
1.17ENST0000039538617ENSE00001616887chr8:133856401-133856563163P20L1_HUMAN917-971550--
1.18cENST0000039538618cENSE00001719560chr8:133858026-1338610523027P20L1_HUMAN971-1017470--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:74
 aligned with P20L1_HUMAN | A8MW92 from UniProtKB/Swiss-Prot  Length:1017

    Alignment length:117
                                    70        80        90       100       110       120       130       140       150       160       170       
          P20L1_HUMAN    61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKA 177
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-------------....----.......eeeee.....eeeeeeeee.....eeeee....eeeehhh.ee..hhhhh..--------------------------........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4 UniProt: 28-85  Exon 1.5  PDB: A:86-114      -----------------------------Exon 1.6e  PDB: -         1.7b     Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------Exon 1.6b  PDB: A:114-143     ---------------------------------- Transcript 1 (2)
                 2equ A  78 GSS-------------GSSG----FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQ--------------------------DWIALVKA 151
                              |      -      | 84    |   90       100       110       120       130       140  |      -         -       144       
                             80            81 84   85                                                       143                        144
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2EQU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EQU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EQU)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (P20L1_HUMAN | A8MW92)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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 Related Entries

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UniProtKB/Swiss-Prot
        P20L1_HUMAN | A8MW92: 2eqm 2jtf

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