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(-) Description

Title :  SOLUTION STRUCTURE OF THE PHF20L1 MBT DOMAIN
 
Authors :  C. Brockmann, A. N. Iberg, K. Rehbein, A. Diehl, M. T. Bedford, H. Oschkinat
Date :  30 Jul 07  (Deposition) - 19 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Histone Binding, Mbt Domain, Solution Nmr, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Brockmann, A. N. Iberg, K. Rehbein, A. Diehl, M. T. Bedford, H. Oschkinat
Structural Analysis Of Histone H4K20 Methyllysine Recognition By The Mbt Domain Of Phf20L1
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHD FINGER PROTEIN 20-LIKE 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6-P1
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-74
    Gene: PHF20L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JTF)

(-) Sites  (0, 0)

(no "Site" information available for 2JTF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JTF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JTF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JTF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JTF)

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003953861cENSE00001521553chr8:133787630-133787891262P20L1_HUMAN-00--
1.2bENST000003953862bENSE00001675977chr8:133790038-133790157120P20L1_HUMAN1-28281A:7-2822
1.4ENST000003953864ENSE00001707399chr8:133806656-133806827172P20L1_HUMAN28-85581A:28-7043
1.5ENST000003953865ENSE00001734578chr8:133806979-13380706385P20L1_HUMAN86-114290--
1.6bENST000003953866bENSE00001605264chr8:133811018-13381110689P20L1_HUMAN114-143300--
1.6eENST000003953866eENSE00001090009chr8:133811341-13381141878P20L1_HUMAN144-169260--
1.7bENST000003953867bENSE00001089992chr8:133816064-133816277214P20L1_HUMAN170-241720--
1.8cENST000003953868cENSE00001090001chr8:133816860-133816985126P20L1_HUMAN241-283430--
1.9dENST000003953869dENSE00002159454chr8:133823291-13382337383P20L1_HUMAN283-310280--
1.10aENST0000039538610aENSE00001731663chr8:133826882-133827134253P20L1_HUMAN311-395850--
1.10dENST0000039538610dENSE00001708692chr8:133829133-133829321189P20L1_HUMAN395-458640--
1.10fENST0000039538610fENSE00001799713chr8:133829584-133829790207P20L1_HUMAN458-527700--
1.11bENST0000039538611bENSE00002182278chr8:133836249-13383630557P20L1_HUMAN527-546200--
1.11hENST0000039538611hENSE00001613063chr8:133837509-133837616108P20L1_HUMAN546-582370--
1.12ENST0000039538612ENSE00001694370chr8:133844480-133844644165P20L1_HUMAN582-637560--
1.13bENST0000039538613bENSE00001666145chr8:133848785-133848966182P20L1_HUMAN637-697610--
1.14aENST0000039538614aENSE00001607526chr8:133849957-133850056100P20L1_HUMAN698-731340--
1.15ENST0000039538615ENSE00001772894chr8:133851632-133851827196P20L1_HUMAN731-796660--
1.16bENST0000039538616bENSE00001622971chr8:133854760-133855120361P20L1_HUMAN796-9161210--
1.17ENST0000039538617ENSE00001616887chr8:133856401-133856563163P20L1_HUMAN917-971550--
1.18cENST0000039538618cENSE00001719560chr8:133858026-1338610523027P20L1_HUMAN971-1017470--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:64
 aligned with P20L1_HUMAN | A8MW92 from UniProtKB/Swiss-Prot  Length:1017

    Alignment length:64
                                    16        26        36        46        56        66    
           P20L1_HUMAN    7 NRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 70
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee...eeeeeeeeeee....eeeee........eeeee.....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: A:7-28------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------Exon 1.4  PDB: A:28-70 UniProt: 28-85       Transcript 1 (2)
                  2jtf A  7 NRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 70
                                    16        26        36        46        56        66
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2JTF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JTF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JTF)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (P20L1_HUMAN | A8MW92)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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        P20L1_HUMAN | A8MW92: 2eqm 2equ

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