2E9X - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF HUMAN GINS CORE COMPLEX

Authors :   K. Kamada, F. Hanaoka

Date :   27 Jan 07 (Deposition) - 10 Apr 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H  (1x)
Biol. Unit 4: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)

Keywords :   Gins Complex, Eukaryotic Dna Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Kamada, Y. Kubota, T. Arata, Y. Shindo, F. Hanaoka
Structure Of The Human Gins Complex And Its Assembly And Functional Interface In Replication Initiation
Nat. Struct. Mol. Biol. V. 14 388 2007
PubMed-ID: 17417653 | Reference-DOI: 10.1038/NSMB1231
(for further references see the PDB file header)

Molecule 1 - DNA REPLICATION COMPLEX GINS PROTEIN PSF1
	Cell Line	:	HELA CELLS
	Chains	:	A, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL TRUNCATION, RESIDUES 1-149
	Gene	:	PSF1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - DNA REPLICATION COMPLEX GINS PROTEIN PSF2
	Cell Line	:	HELA CELLS
	Chains	:	B, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PSF2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 3 - GINS COMPLEX SUBUNIT 3
	Cell Line	:	HELA CELLS
	Chains	:	C, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PSF3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 4 - GINS COMPLEX SUBUNIT 4
	Cell Line	:	HELA CELLS
	Chains	:	D, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SLD5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H
Biological Unit 3 (1x)	:	A	B	C	D	E	F	G	H
Biological Unit 4 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)	G (1x)	H (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:139 , MET A:140 , LYS A:141 , HOH A:1038	BINDING SITE FOR RESIDUE SO4 A 1001
2	AC2	SOFTWARE	ARG A:91 , GLY A:95 , SER A:96 , HOH A:1013 , HOH A:1014	BINDING SITE FOR RESIDUE SO4 A 1002
3	AC3	SOFTWARE	PRO A:99 , ASN A:100 , HOH A:1025 , ARG B:137 , ASP F:133 , ARG F:137 , HOH F:1013	BINDING SITE FOR RESIDUE SO4 A 1003
4	AC4	SOFTWARE	ARG H:174 , ARG H:176	BINDING SITE FOR RESIDUE SO4 H 1004
5	AC5	SOFTWARE	LYS C:1090 , TRP C:1096 , ARG F:75 , ARG F:79	BINDING SITE FOR RESIDUE SO4 F 1005
6	AC6	SOFTWARE	ASP E:139 , MET E:140 , LYS E:141 , HOH E:1030	BINDING SITE FOR RESIDUE SO4 E 1006

(no "SS Bond" information available for 2E9X)

Asymmetric Unit

No.	Residues
1	Gly B:34	-	Pro B:35
2	Gly C:1113	-	Pro C:1114
3	Gly F:34	-	Pro F:35
4	Gly G:113	-	Pro G:114

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051606	V	97	I	PSF1_HUMAN	Polymorphism	6076347	A/E	V	97	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051606	V	97	I	PSF1_HUMAN	Polymorphism	6076347	A	V	97	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051606	V	97	I	PSF1_HUMAN	Polymorphism	6076347	E	V	97	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051606	V	97	I	PSF1_HUMAN	Polymorphism	6076347	A/E	V	97	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_051606	V	97	I	PSF1_HUMAN	Polymorphism	6076347	A/E	V	97	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2E9X)

Asymmetric Unit (20, 40)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000253462	1	ENSE00001303150	chr16:85722605-85722415	191	PSF2_HUMAN	1-30	30	2	B:1-30 F:1-30	30 30
1.2	ENST00000253462	2	ENSE00000945757	chr16:85721180-85721066	115	PSF2_HUMAN	31-69	39	2	B:31-69 F:31-69	39 39
1.3	ENST00000253462	3	ENSE00000945758	chr16:85715287-85715188	100	PSF2_HUMAN	69-102	34	2	B:69-102 F:69-102	34 34
1.4	ENST00000253462	4	ENSE00000897887	chr16:85712272-85712146	127	PSF2_HUMAN	102-144	43	2	B:102-144 F:102-144	43 43
1.5	ENST00000253462	5	ENSE00001305255	chr16:85711943-85709804	2140	PSF2_HUMAN	145-185	41	2	B:145-175 F:145-175	31 31

2.1b	ENST00000262460	1b	ENSE00001825970	chr20:25388363-25388531	169	PSF1_HUMAN	1-25	25	2	A:1-25 E:1-25	25 25
2.3b	ENST00000262460	3b	ENSE00000661036	chr20:25394426-25394490	65	PSF1_HUMAN	26-47	22	2	A:26-47 E:26-47	22 22
2.4a	ENST00000262460	4a	ENSE00000661037	chr20:25397740-25397838	99	PSF1_HUMAN	47-80	34	2	A:47-80 E:47-80	34 34
2.5	ENST00000262460	5	ENSE00000661038	chr20:25398741-25398831	91	PSF1_HUMAN	80-110	31	2	A:80-110 E:80-110	31 31
2.7	ENST00000262460	7	ENSE00001597298	chr20:25405847-25405963	117	PSF1_HUMAN	111-149	39	2	A:111-144 E:111-144	34 34
2.8	ENST00000262460	8	ENSE00001798595	chr20:25422338-25422412	75	PSF1_HUMAN	150-174	25	0	-	-
2.10b	ENST00000262460	10b	ENSE00001660487	chr20:25426559-25429191	2633	PSF1_HUMAN	175-196	22	0	-	-

3.1a	ENST00000276533	1a	ENSE00001746541	chr8:41386725-41386915	191	SLD5_HUMAN	-	0	0	-	-
3.1h	ENST00000276533	1h	ENSE00002164027	chr8:41387703-41387817	115	SLD5_HUMAN	1-32	32	2	D:21-32 H:21-32	12 12
3.2b	ENST00000276533	2b	ENSE00001790337	chr8:41393879-41393965	87	SLD5_HUMAN	33-61	29	2	D:33-61 H:33-61	29 29
3.3a	ENST00000276533	3a	ENSE00001683597	chr8:41394699-41394812	114	SLD5_HUMAN	62-99	38	2	D:62-99 (gaps) H:62-99 (gaps)	38 38
3.4	ENST00000276533	4	ENSE00001128877	chr8:41397197-41397294	98	SLD5_HUMAN	100-132	33	2	D:100-132 H:100-132	33 33
3.5	ENST00000276533	5	ENSE00000980549	chr8:41397435-41397523	89	SLD5_HUMAN	132-162	31	2	D:132-162 H:132-162	31 31
3.6b	ENST00000276533	6b	ENSE00000980550	chr8:41399328-41399418	91	SLD5_HUMAN	162-192	31	2	D:162-192 H:162-192	31 31
3.6h	ENST00000276533	6h	ENSE00001253142	chr8:41399510-41402565	3056	SLD5_HUMAN	192-223	32	2	D:192-223 H:192-223	32 32

4.1b	ENST00000318129	1b	ENSE00001827766	chr16:58426325-58426691	367	PSF3_HUMAN	1-62	62	2	C:1001-1062 (gaps) G:1-62 (gaps)	62 62
4.3	ENST00000318129	3	ENSE00001218868	chr16:58437002-58437235	234	PSF3_HUMAN	63-140	78	2	C:1063-1140 G:63-140	78 78
4.4b	ENST00000318129	4b	ENSE00001829311	chr16:58438403-58440048	1646	PSF3_HUMAN	141-216	76	2	C:1141-1192 G:141-192	52 52

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with PSF1_HUMAN | Q14691 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
          PSF1_HUMAN      1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPK  144
               SCOP domains d2e9xa1 A:1-144 DNA replication complex GINS protein PSF1                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------I----------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) Exon 2.1b  PDB: A:1-25   Exon 2.3b  PDB: A:26-4--------------------------------Exon 2.5  PDB: A:80-110        Exon 2.7  PDB: A:111-144           Transcript 2 (1)
           Transcript 2 (2) ----------------------------------------------Exon 2.4a  PDB: A:47-80           ---------------------------------------------------------------- Transcript 2 (2)
                2e9x A    1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPK  144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:175
 aligned with PSF2_HUMAN | Q9Y248 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
          PSF2_HUMAN      1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNLQ  175
               SCOP domains d2e9xb2 B:1-61 automated matches                             d2e9xb1 B:62-175 DNA replication complex GINS protein PSF2                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eeeeee......eee..eee........eeeehhhhhhhhhh..eee......hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:1-30         Exon 1.2  PDB: B:31-69 UniProt: 31-69  --------------------------------Exon 1.4  PDB: B:102-144 UniProt: 102-144  Exon 1.5  PDB: B:145-175        Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------Exon 1.3  PDB: B:69-102           ------------------------------------------------------------------------- Transcript 1 (2)
                2e9x B    1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNLQ  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:186
 aligned with PSF3_HUMAN | Q9BRX5 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:195
                               1                                                                                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     
          PSF3_HUMAN      - ---MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG  192
               SCOP domains ---d2e9xc2 C:1001-1087 GINS complex subunit 3, PSF         3                              d2e9xc1 C:1088-1192 GINS complex subunit 3, PSF3                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.................hhhhhhhh..eeeeee......hhhhh---------........eeeeehhhhhhhh......eee..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 4 ---Exon 4.1b  PDB: C:1001-1062 (gaps) UniProt: 1-62              Exon 4.3  PDB: C:1063-1140 UniProt: 63-140                                    Exon 4.4b  PDB: C:1141-1192 UniProt: 141-216         Transcript 4
                2e9x C  998 GPHMSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFF---------DNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG 1192
                                  1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187     
                                                                          1047      1057

Chain D from PDB  Type:PROTEIN  Length:197
 aligned with SLD5_HUMAN | Q9BRT9 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:203
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
          SLD5_HUMAN     21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223
               SCOP domains d2e9xd1 D:21-165 GINS complex subunit 4, SLD      5                                                                                              d2e9xd2 D:166-223 GINS complex subunit 4, SLD5             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......eeeee....eeeeee....hhhhheeeee....eeeeehhhhhhhhhhh..eee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.1h   Exon 3.2b  PDB: D:33-61      Exon 3.3a  PDB: D:62-99 (gaps)        Exon 3.4  PDB: D:100-132         -----------------------------Exon 3.6b  PDB: D:162-192      ------------------------------- Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------------------------------------Exon 3.5  PDB: D:132-162       -----------------------------Exon 3.6h  PDB: D:192-223        Transcript 3 (2)
                2e9x D   21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEEN------EDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223
                                    30        40        50        60   |     -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
                                                                      64     71

Chain E from PDB  Type:PROTEIN  Length:144
 aligned with PSF1_HUMAN | Q14691 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
          PSF1_HUMAN      1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPK  144
               SCOP domains d2e9xe_ E: DNA replication complex GINS protein PSF1                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------I----------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) Exon 2.1b  PDB: E:1-25   Exon 2.3b  PDB: E:26-4--------------------------------Exon 2.5  PDB: E:80-110        Exon 2.7  PDB: E:111-144           Transcript 2 (1)
           Transcript 2 (2) ----------------------------------------------Exon 2.4a  PDB: E:47-80           ---------------------------------------------------------------- Transcript 2 (2)
                2e9x E    1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPK  144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:175
 aligned with PSF2_HUMAN | Q9Y248 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
          PSF2_HUMAN      1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNLQ  175
               SCOP domains d2e9xf2 F:1-61 automated matches                             d2e9xf1 F:62-175 DNA replication complex GINS protein PSF2                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eeeeee......eee..eee........eeeehhhhhhhhhh..eee......hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: F:1-30         Exon 1.2  PDB: F:31-69 UniProt: 31-69  --------------------------------Exon 1.4  PDB: F:102-144 UniProt: 102-144  Exon 1.5  PDB: F:145-175        Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------Exon 1.3  PDB: F:69-102           ------------------------------------------------------------------------- Transcript 1 (2)
                2e9x F    1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNLQ  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain G from PDB  Type:PROTEIN  Length:183
 aligned with PSF3_HUMAN | Q9BRX5 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  
          PSF3_HUMAN      1 MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG  192
               SCOP domains d2e9xg2 G:1-87 GINS complex subunit 3, PSF3                                            d2e9xg1 G:88-192 GINS complex subunit 3, PSF3                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................hhhhhhhh..eeeeee...........---------........eeeeehhhhhhhh......eee..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 4 Exon 4.1b  PDB: G:1-62 (gaps) UniProt: 1-62                   Exon 4.3  PDB: G:63-140 UniProt: 63-140                                       Exon 4.4b  PDB: G:141-192 UniProt: 141-216           Transcript 4
                2e9x G    1 MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFF---------DNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKG  192
                                    10        20        30        40      |  -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190  
                                                                         47        57

Chain H from PDB  Type:PROTEIN  Length:197
 aligned with SLD5_HUMAN | Q9BRT9 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:203
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
          SLD5_HUMAN     21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223
               SCOP domains d2e9xh1 H:21-165 GINS complex subunit 4, SLD      5                                                                                              d2e9xh2 H:166-223 GINS complex subunit 4, SLD5             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.......eeeeee...eeeeee....hhhhheeeee....eeeeehhhhhhhhhh..eeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.1h   Exon 3.2b  PDB: H:33-61      Exon 3.3a  PDB: H:62-99 (gaps)        Exon 3.4  PDB: H:100-132         -----------------------------Exon 3.6b  PDB: H:162-192      ------------------------------- Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------------------------------------Exon 3.5  PDB: H:132-162       -----------------------------Exon 3.6h  PDB: H:192-223        Transcript 3 (2)
                2e9x H   21 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEEN------EDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223
                                    30        40        50        60   |     -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
                                                                      64     71

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 2E9X)

(no "Pfam Domain" information available for 2E9X)

Asymmetric Unit(hide GO term definitions)

Chain A,E (PSF1_HUMAN | Q14691)

molecular function
	GO:0043138	3'-5' DNA helicase activity	Catalysis of the unwinding of the DNA helix in the direction 3' to 5'.
biological process
	GO:0032508	DNA duplex unwinding	The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006271	DNA strand elongation involved in DNA replication	The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand.
	GO:1902983	DNA strand elongation involved in mitotic DNA replication	Any DNA strand elongation involved in mitotic cell cycle DNA replication.
	GO:0001833	inner cell mass cell proliferation	The proliferation of cells in the inner cell mass.
cellular component
	GO:0000811	GINS complex	A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,F (PSF2_HUMAN | Q9Y248)

molecular function
	GO:0043138	3'-5' DNA helicase activity	Catalysis of the unwinding of the DNA helix in the direction 3' to 5'.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0032508	DNA duplex unwinding	The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006271	DNA strand elongation involved in DNA replication	The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand.
	GO:0000727	double-strand break repair via break-induced replication	The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome.
	GO:1902975	mitotic DNA replication initiation	Any DNA replication initiation involved in mitotic cell cycle DNA replication.
cellular component
	GO:0000811	GINS complex	A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0031298	replication fork protection complex	A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.

Chain C,G (PSF3_HUMAN | Q9BRX5)

biological process
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006271	DNA strand elongation involved in DNA replication	The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand.
cellular component
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D,H (SLD5_HUMAN | Q9BRT9)

molecular function
	GO:0043138	3'-5' DNA helicase activity	Catalysis of the unwinding of the DNA helix in the direction 3' to 5'.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0032508	DNA duplex unwinding	The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006270	DNA replication initiation	The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.
	GO:0006271	DNA strand elongation involved in DNA replication	The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand.
	GO:0000727	double-strand break repair via break-induced replication	The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome.
	GO:0001833	inner cell mass cell proliferation	The proliferation of cells in the inner cell mass.
cellular component
	GO:0000811	GINS complex	A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0031298	replication fork protection complex	A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.

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	2e9x
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	SLD5_HUMAN \| Q9BRT9
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	PSF1_HUMAN \| Q14691	:	2eho 2q9q
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(no "Related Entries Specified in the PDB File" available for 2E9X)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (0, 0)

Exons (20, 40)

Sequences/Alignments

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SCOP Domains (7, 14)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 38)

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