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(-) Description

Title :  STRUCTURE OF CINNAMYCIN COMPLEXED WITH LYSOPHOSPHATIDYLETHANOLAMINE
 
Authors :  K. Hosoda, M. Ohya, T. Kohno, T. Maeda, S. Endo, K. Wakamatsu
Date :  27 Jan 06  (Deposition) - 21 Feb 06  (Release) - 27 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Antibiotic, Immunopotentiator, Antimicrobial, Antitumor, Lipid Binding, Phosphatidylethanolamine, Lanthionine, Thioester (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Hosoda, M. Ohya, T. Kohno, T. Maeda, S. Endo, K. Wakamatsu
Structure Determination Of An Immunopotentiator Peptide, Cinnamycin, Complexed With Lysophosphatidylethanolamine By 1H-Nmr1
J. Biochem. (Tokyo) V. 119 226 1996
PubMed-ID: 8882709

(-) Compounds

Molecule 1 - LANTIBIOTIC CINNAMYCIN
    Chains: A
    Organism Scientific: STREPTOMYCES GRISEOVERTICILLATUS
    Organism Taxid: 68215
    Synonym: LANTHIOPEPTIN, LANTIBIOTIC RO 09- 0198

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

NMR Structure (4, 5)
No.NameCountTypeFull Name
1BH21Mod. Amino Acid(3R)-3-HYDROXY-L-ASPARTIC ACID
2DAL1Mod. Amino AcidD-ALANINE
3DBB2Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
4LSP1Ligand/Ion(7S)-4,7-DIHYDROXY-10-OXO-3,5,9-TRIOXA-4-PHOSPHAUNDECAN-1-AMINIUM 4-OXIDE
NMR Structure * (4, 5)
No.NameCountTypeFull Name
1BH21Mod. Amino Acid(3R)-3-HYDROXY-L-ASPARTIC ACID
2DAL1Mod. Amino AcidD-ALANINE
3DBB2Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
4LSP1Ligand/Ion(7S)-4,7-DIHYDROXY-10-OXO-3,5,9-TRIOXA-4-PHOSPHAUNDECAN-1-AMINIUM 4-OXIDE

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:5 , GLY A:8 , PRO A:9 , VAL A:13 , BH2 A:15BINDING SITE FOR RESIDUE LSP A 100
2AC2SOFTWARELSP A:100BINDING SITE FOR CHAIN A OF LANTIBIOTIC CINNAMYCIN

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:19
 aligned with CINA_STRGV | P29827 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:19
                                    69         
            CINA_STRGV   60 CRQSCSFGPFTFVCDGNTK 78
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  2dde A  1 CRQsCSFGPFtFVCdGNtK 19
                               |    10|   |  | 
                               |     11-DBB  | 
                               4-DAL     15-BH2
                                            18-DBB
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2DDE)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DDE)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (CINA_STRGV | P29827)
molecular function
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1aj1 SOLUTION STRUCTURE OF THE LANTIBIOTIC ACTAGARDINE
1mqx SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN MEOH/H2O MIXTURE
1mqy SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN DPC MICELLES
1mqz SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN BOUND TO LIPID II IN DPC MICELLES
1qow CRYSTAL STRUCTURE OF THE TUPE B LANTIBIOTIC MERSACIDIN
1w9n SOLUTION STRUCTURE OF THE LANTIBIOTIC EPILANCIN 15X
1wco SOLUTION STRUCTURE OF NISIN AND LIPID II COMPLEX
2ktn SOLUTION STRUCTURE OF LCH-ALPHA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC SYSTEM LICHENICIDIN VK21 A1
2kto SOLUTION STRUCTURE OF LCH-BETA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC LICHENICIDIN VK21 A2