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(-) Description

Title :  DIMER STRUCTURE OF THE BACTERIAL CELL DIVISION REGULATOR MIPZ
 
Authors :  K. A. Michie, J. Lowe
Date :  02 Jul 10  (Deposition) - 13 Jul 11  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Replication, Cell Division, Atpase, Waca (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kiekebusch, K. A. Michie, L. O. Essen, J. Lowe, M. Thanbichler
Localized Dimerization And Nucleoid Binding Drive Gradient Formation By The Bacterial Cell Division Inhibitor Mipz.
Mol. Cell V. 46 245 2012
PubMed-ID: 22483621  |  Reference-DOI: 10.1016/J.MOLCEL.2012.03.004

(-) Compounds

Molecule 1 - MIPZ
    Atcc: 19089
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS17
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Mutation: YES
    Organism Scientific: CAULOBACTER CRESCENTUS
    Organism Taxid: 155892
    Other Details: PCRED FROM GENOMIC DNA FROM ATCC 19089D. MUTATION CONSTRUCTED BY SPLICE-OVERLAP EXTENSION.
    Strain: CB15N
    Synonym: DIVISION PLANE POSITIONING ATPASE MIPZ

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1AGS2Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:19 , GLN A:45 , THR A:47 , AGS A:1272 , HOH A:2003 , HOH A:2027 , LYS B:13BINDING SITE FOR RESIDUE MG A1271
2AC2SOFTWAREGLY A:14 , GLY A:15 , ALA A:16 , GLY A:17 , LYS A:18 , SER A:19 , THR A:20 , GLN A:45 , ASN A:186 , ARG A:187 , ARG A:219 , ASP A:220 , ARG A:221 , TYR A:224 , ARG A:225 , MG A:1271 , HOH A:2027 , LYS B:13 , GLY B:14 , SER B:136 , VAL B:138 , ASP B:139BINDING SITE FOR RESIDUE AGS A1272
3AC3SOFTWARESER B:19 , GLN B:45 , THR B:47 , AGS B:1273 , HOH B:2004BINDING SITE FOR RESIDUE MG B1272
4AC4SOFTWARELYS A:13 , GLY A:14 , SER A:136 , VAL A:138 , ASP A:139 , GLY B:14 , GLY B:15 , ALA B:16 , GLY B:17 , LYS B:18 , SER B:19 , THR B:20 , GLN B:45 , ASN B:186 , ARG B:187 , ARG B:219 , ASP B:220 , ARG B:221 , TYR B:224 , ARG B:225 , MG B:1272 , HOH B:2004 , HOH B:2022BINDING SITE FOR RESIDUE AGS B1273

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XJ9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2XJ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XJ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XJ9)

(-) Exons   (0, 0)

(no "Exon" information available for 2XJ9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with Q9A6C9_CAUCR | Q9A6C9 from UniProtKB/TrEMBL  Length:278

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
         Q9A6C9_CAUCR     3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVIYRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLGLSAYS 270
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhh......eee....hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhh..eeeeeee.hhhhhh..ee...--....eehhhhhhhhhhhhh..........eeeeeee.....-hhhhhhhhhhhhhhhhhhh.eee.....hhhhh.hhhhh.hhhhh..........hhhhhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xj9 A   3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLALRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDMLGTVDP--LELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATT-ARNRKRLEDRLNALAKRVGFRIGPGLRDRVIYRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLGLSAYS 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142     | 152       162       172       182        |-|      202       212       222       232       242       252       262        
                                                                                                                                                                           148  |                                     191 |                                                                             
                                                                                                                                                                              151                                       193                                                                             


Chain B from PDB  Type:PROTEIN  Length:265
 aligned with Q9A6C9_CAUCR | Q9A6C9 from UniProtKB/TrEMBL  Length:278

    Alignment length:269
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262         
         Q9A6C9_CAUCR     3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVIYRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLGLSAYSG 271
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhh......eee....hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhh..eeeeeee.hhhhhhhheee......eeeehhhhhhhhhhhhh......--..eeeeeee.....hhhhhhhhhhhhhhhhhhhh.eee.....hhhhh.hhhhh.hhhhh...--....hhhhhhhhhhhhhhhhhh.hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xj9 B   3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLALRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQ--AMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVIYRELFPFGLTIADLSPQ--PVPVSLQHLAARQELRALMHSLGLSAYSG 271
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172  |  | 182       192       202       212       222       232       | -|      252       262         
                                                                                                                                                                                                      175  |                                                           240  |                            
                                                                                                                                                                                                         178                                                              243
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XJ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XJ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XJ9)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2XJ9)

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(-) Related Entries Specified in the PDB File

2xit CRYSTAL STRUCTURE OF MONOMERIC MIPZ
2xj4 STRUCTURE OF THE BACTERIAL CELL DIVISION REGULATOR PROTEIN MIPZ