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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA

Authors :   L. J. Worrall, M. Vuckovic, N. C. J. Strynadka

Date :   28 Jan 10 (Deposition) - 05 May 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.54

Chains :   Asym./Biol. Unit : A

Keywords :   Protein Transport, Transport, Pathogenesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Worrall, M. Vuckovic, N. C. J. Strynadka
Crystal Structure Of The C-Terminal Domain Of The Salmonella Type Iii Secretion System Export Apparatus Protein Inva.
Protein Sci. V. 19 1091 2010
PubMed-ID: 20306492 | Reference-DOI: 10.1002/PRO.382

Molecule 1 - INVASION PROTEIN INVA
	Atcc	:	700720
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 357-685
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 3)

No.	Name	Count	Type	Full Name
1	CXS	1	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:479 , HIS A:483 , ASN A:584 , GLU A:596 , HOH A:2077	BINDING SITE FOR RESIDUE CXS A1686
2	AC2	SOFTWARE	TYR A:391 , HIS A:483 , ARG A:540 , LYS A:581 , HOH A:2078	BINDING SITE FOR RESIDUE PO4 A1687
3	AC3	SOFTWARE	ARG A:535 , ARG A:652 , LYS A:656	BINDING SITE FOR RESIDUE PO4 A1688

(no "SS Bond" information available for 2X4A)

(no "Cis Peptide Bond" information available for 2X4A)

Asymmetric/Biological Unit (11, 11)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_INVA_SALTY_004 *	S	369	N	INVA_SALTY	---	---	A	S	369	N
02	UniProt	VAR_INVA_SALTY_005 *	E	381	D	INVA_SALTY	---	---	A	E	381	D
03	UniProt	VAR_INVA_SALTY_006 *	E	404	D	INVA_SALTY	---	---	A	E	404	D
04	UniProt	VAR_INVA_SALTY_007 *	D	407	S	INVA_SALTY	---	---	A	D	407	S
05	UniProt	VAR_INVA_SALTY_008 *	V	412	I	INVA_SALTY	---	---	A	V	412	I
06	UniProt	VAR_INVA_SALTY_009 *	V	440	A	INVA_SALTY	---	---	A	V	440	A
07	UniProt	VAR_INVA_SALTY_010 *	I	448	T	INVA_SALTY	---	---	A	I	448	T
08	UniProt	VAR_INVA_SALTY_011 *	R	475	Q	INVA_SALTY	---	---	A	R	475	Q
09	UniProt	VAR_INVA_SALTY_012 *	L	489	V	INVA_SALTY	---	---	A	L	489	V
10	UniProt	VAR_INVA_SALTY_013 *	V	600	I	INVA_SALTY	---	---	A	V	600	I
11	UniProt	VAR_INVA_SALTY_014 *	D	617	E	INVA_SALTY	---	---	A	D	617	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2X4A)

(no "Exon" information available for 2X4A)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:327
 aligned with INVA_SALTY | P0A1I3 from UniProtKB/Swiss-Prot  Length:685

    Alignment length:327
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       
           INVA_SALTY   359 TVPLILLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVIKTI 685
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains FHIPEP-2x4aA01 A:359-679                                                                                                                                                                                                                                                                                                         ------ Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.......eeeeee..eeeeeee.....eee...hhhhhhhh...eeeee..eeeeeehhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhheee....eee..hhhhhhhhhhhhhhhhhh...hhhh.eeeehhhhhhhhhhhhhh.....eeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------N-----------D----------------------D--S----I---------------------------A-------T--------------------------Q-------------V--------------------------------------------------------------------------------------------------------------I----------------E-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x4a A 359 TVPLILLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVIKTI 685
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2X4A)

(no "CATH Domain" information available for 2X4A)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: FHIPEP] (5)

Family: FHIPEP (5)

Salmonella typhimurium (3)

FHIPEP-2x4aA01

A:359-679

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (INVA_SALTY | P0A1I3)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0009306	protein secretion	The controlled release of proteins from a cell.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2x4a)

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	2x4a
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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UniProtKB/Swiss-Prot
	INVA_SALTY \| P0A1I3	:	2x49 3lw9

2x49	CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (11, 11)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

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