2X49 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA

Authors :   L. J. Worrall, M. Vuckovic, N. C. J. Strynadka

Date :   28 Jan 10 (Deposition) - 31 Mar 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Protein Transport, Transport, Pathogenesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Worrall, M. Vuckovic, N. C. J. Strynadka
Crystal Structure Of The C-Terminal Domain Of The Salmonella Type Iii Secretion System Export Apparatus Protein Inva.
Protein Sci. V. 19 1091 2010
PubMed-ID: 20306492 | Reference-DOI: 10.1002/PRO.382

Molecule 1 - INVASION PROTEIN INVA
	Atcc	:	700720
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 357-685
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2
	Synonym	:	INVA

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 6)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	HG	3	Ligand/Ion	MERCURY (II) ION
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:579 , HIS A:580 , ASP A:675 , SER A:676	BINDING SITE FOR RESIDUE HG A1686
2	AC2	SOFTWARE	PHE A:423 , CYS A:484	BINDING SITE FOR RESIDUE HG A1687
3	AC3	SOFTWARE	HIS A:461 , HOH A:2110	BINDING SITE FOR RESIDUE HG A1688
4	AC4	SOFTWARE	ASN A:445 , GLU A:463 , HOH A:2091 , HOH A:2156	BINDING SITE FOR RESIDUE CA A1689
5	AC5	SOFTWARE	ASP A:626	BINDING SITE FOR RESIDUE CA A1690
6	AC6	SOFTWARE	HIS A:569 , ARG A:652 , HOH A:2291	BINDING SITE FOR RESIDUE PEG A1691

(no "SS Bond" information available for 2X49)

(no "Cis Peptide Bond" information available for 2X49)

Asymmetric/Biological Unit (12, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_INVA_SALTY_003 *	S	344	T	INVA_SALTY	---	---	A	S	354	T
02	UniProt	VAR_INVA_SALTY_004 *	S	369	N	INVA_SALTY	---	---	A	S	369	N
03	UniProt	VAR_INVA_SALTY_005 *	E	381	D	INVA_SALTY	---	---	A	E	381	D
04	UniProt	VAR_INVA_SALTY_006 *	E	404	D	INVA_SALTY	---	---	A	E	404	D
05	UniProt	VAR_INVA_SALTY_007 *	D	407	S	INVA_SALTY	---	---	A	D	407	S
06	UniProt	VAR_INVA_SALTY_008 *	V	412	I	INVA_SALTY	---	---	A	V	412	I
07	UniProt	VAR_INVA_SALTY_009 *	V	440	A	INVA_SALTY	---	---	A	V	440	A
08	UniProt	VAR_INVA_SALTY_010 *	I	448	T	INVA_SALTY	---	---	A	I	448	T
09	UniProt	VAR_INVA_SALTY_011 *	R	475	Q	INVA_SALTY	---	---	A	R	475	Q
10	UniProt	VAR_INVA_SALTY_012 *	L	489	V	INVA_SALTY	---	---	A	L	489	V
11	UniProt	VAR_INVA_SALTY_013 *	V	600	I	INVA_SALTY	---	---	A	V	600	I
12	UniProt	VAR_INVA_SALTY_014 *	D	617	E	INVA_SALTY	---	---	A	D	617	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2X49)

(no "Exon" information available for 2X49)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:333
 aligned with INVA_SALTY | P0A1I3 from UniProtKB/Swiss-Prot  Length:685

    Alignment length:343
                                   352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682   
           INVA_SALTY   343 GSSLGLIGDLDKVSTETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVIKTI 685
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------FHIPEP-2x49A01 A:357-679                                                                                                                                                                                                                                                                                                           ------ Pfam domains
         Sec.struct. author .hhh----------hhh..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.......eeeeee..eeeeeee.....eee....hhhhhh....eeeee..eeeeeehhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhheee....eee..hhhhhhhhhhhhhhhhh....hhhh.eeee...hhhhhhhhhh......eeee.hhhh....eeeeeee Sec.struct. author
                 SAPs(SNPs) -T------------------------N-----------D----------------------D--S----I---------------------------A-------T--------------------------Q-------------V--------------------------------------------------------------------------------------------------------------I----------------E-------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x49 A 353 GSHM----------TETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVIKTI 685
                               |     -    |  362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682   
                             356        357

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2X49)

(no "CATH Domain" information available for 2X49)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: FHIPEP] (5)

Family: FHIPEP (5)

Salmonella typhimurium (3)

FHIPEP-2x49A01

A:357-679

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (INVA_SALTY | P0A1I3)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0009306	protein secretion	The controlled release of proteins from a cell.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2x49)

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Access by PDB/NDB ID
	2x49
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	INVA_SALTY \| P0A1I3
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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UniProtKB/Swiss-Prot
	INVA_SALTY \| P0A1I3	:	2x4a 3lw9

2x4a	CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (12, 12)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

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