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2WR0
Asym. Unit
Info
Asym.Unit (502 KB)
Biol.Unit 1 (494 KB)
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(1)
Title
:
STRUCTURES OF INFLUENZA H2 HEMAGGLUTININS
Authors
:
J. Liu, D. Stevens, L. Haire, P. Coombs, R. Russell, S. Gamblin, J. Skehel
Date
:
28 Aug 09 (Deposition) - 29 Sep 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Viral Protein, Glycoprotein, Envelope Protein, Liproprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
From The Cover: Structures Of Receptor Complexes Formed By Hemagglutinins From The Asian Influenza Pandemic Of 1957.
Proc. Natl. Acad. Sci. Usa V. 106 17175 2009
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:476 , ASN A:479 , SER A:480 , ASN A:483 , HOH A:2151
BINDING SITE FOR RESIDUE NAG A1499
02
AC2
SOFTWARE
ASN C:168 , TRP C:239 , VAL C:241 , HOH C:2158
BINDING SITE FOR RESIDUE NAG C1497
03
AC3
SOFTWARE
ASN A:168 , TRP A:239 , VAL A:241 , HOH A:2152 , HOH A:2153 , HOH A:2154
BINDING SITE FOR RESIDUE NAG A1500
04
AC4
SOFTWARE
ASN B:168 , TRP B:239 , VAL B:241 , NAG B:1500
BINDING SITE FOR RESIDUE NAG B1499
05
AC5
SOFTWARE
TRP B:239 , NAG B:1499
BINDING SITE FOR RESIDUE NAG B1500
06
AC6
SOFTWARE
GLU B:476 , ASN B:479 , ASN B:483 , THR B:485 , NAG B:1502
BINDING SITE FOR RESIDUE NAG B1501
07
AC7
SOFTWARE
GLU B:476 , NAG B:1501 , BMA B:1503 , HOH B:2159
BINDING SITE FOR RESIDUE NAG B1502
08
AC8
SOFTWARE
NAG B:1502 , BMA B:1504 , HOH B:2160
BINDING SITE FOR RESIDUE BMA B1503
09
AC9
SOFTWARE
BMA B:1503
BINDING SITE FOR RESIDUE BMA B1504
10
BC1
SOFTWARE
ASP C:124 , GLU C:476 , ASN C:479 , ASN C:483 , THR C:485 , NAG C:1499
BINDING SITE FOR RESIDUE NAG C1498
11
BC2
SOFTWARE
NAG C:1498 , BMA C:1500
BINDING SITE FOR RESIDUE NAG C1499
12
BC3
SOFTWARE
NAG C:1499 , MAN C:1501 , HOH C:2159
BINDING SITE FOR RESIDUE BMA C1500
13
BC4
SOFTWARE
LYS C:164 , BMA C:1500 , HOH C:2160 , HOH C:2161 , HOH C:2162
BINDING SITE FOR RESIDUE MAN C1501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2wr0a1 (A:5-325)
1b: SCOP_d2wr0b1 (B:5-326)
1c: SCOP_d2wr0c1 (C:6-324)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Unidentified influenza virus [TaxId: 11309]
(4)
1a
d2wr0a1
A:5-325
1b
d2wr0b1
B:5-326
1c
d2wr0c1
C:6-324
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2wr0A02 (A:52-272)
1b: CATH_2wr0B02 (B:52-272)
1c: CATH_2wr0C02 (C:52-272)
2a: CATH_2wr0C01 (C:6-51,C:273-496)
2b: CATH_2wr0A01 (A:5-51,A:273-498)
2c: CATH_2wr0B01 (B:5-51,B:273-498)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Unidentified influenza virus. Organism_taxid: 11309
(4)
1a
2wr0A02
A:52-272
1b
2wr0B02
B:52-272
1c
2wr0C02
C:52-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Unidentified influenza virus. Organism_taxid: 11309
(4)
2a
2wr0C01
C:6-51,C:273-496
2b
2wr0A01
A:5-51,A:273-498
2c
2wr0B01
B:5-51,B:273-498
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_2wr0C01 (C:7-496)
1b: PFAM_Hemagglutinin_2wr0C02 (C:7-496)
1c: PFAM_Hemagglutinin_2wr0C03 (C:7-496)
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Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
unidentified influenza virus
(1)
1a
Hemagglutinin-2wr0C01
C:7-496
1b
Hemagglutinin-2wr0C02
C:7-496
1c
Hemagglutinin-2wr0C03
C:7-496
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (502 KB)
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