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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE TIGR4 ( SP4GH98) IN COMPLEX WITH THE LEWISY PENTASACCHARIDE BLOOD GROUP ANTIGEN.
 
Authors :  M. A. Higgins, G. E. Whitworth, N. El Warry, M. Randriantsoa, E. Samain, R. D. Burke, D. J. Vocadlo, A. B. Boraston
Date :  30 Jun 09  (Deposition) - 14 Jul 09  (Release) - 22 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Glycoside Hydrolase, Streptococcus Pneumoniae, Lewisy Blood Group Antigen, Fucose Utilization (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Higgins, G. E. Whitworth, N. El Warry, M. Randriantsoa, E. Samain, R. D. Burke, D. J. Vocadlo, A. B. Boraston
Differential Recognition And Hydrolysis Of Host Carbohydrate-Antigens By Streptococcus Pneumoniae Family 98 Glycoside Hydrolases.
J. Biol. Chem. V. 284 26161 2009
PubMed-ID: 19608744  |  Reference-DOI: 10.1074/JBC.M109.024067

(-) Compounds

Molecule 1 - FUCOLECTIN-RELATED PROTEIN
    Atcc: BAA-334
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 STAR (DE3)
    Expression System Taxid: 469008
    Fragment: CATALYTIC MODULE, RESIDUES 31-589
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4
    Synonym: GLYCOSIDE HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2GAL1Ligand/IonBETA-D-GALACTOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:53 , HIS A:87 , SER A:129 , ILE A:157 , GLU A:301 , GAL A:1591 , FUC A:1593BINDING SITE FOR RESIDUE FUC A1590
2AC2SOFTWARETHR A:222 , TRP A:253 , GLU A:257 , FUC A:1590 , NAG A:1592 , FUC A:1593 , HOH A:2332 , HOH A:2334BINDING SITE FOR RESIDUE GAL A1591
3AC3SOFTWARETYR A:160 , TRP A:161 , THR A:222 , GAL A:1591 , FUC A:1593 , HOH A:2069BINDING SITE FOR RESIDUE NAG A1592
4AC4SOFTWARESER A:96 , ILE A:98 , TRP A:512 , FUC A:1590 , GAL A:1591 , NAG A:1592 , HOH A:2334BINDING SITE FOR RESIDUE FUC A1593

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WMG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:93 -Pro A:94
2Glu A:301 -Cys A:302

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WMG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WMG)

(-) Exons   (0, 0)

(no "Exon" information available for 2WMG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:553
 aligned with A0A0H2US34_S | A0A0H2US34 from UniProtKB/TrEMBL  Length:1038

    Alignment length:555
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584     
         A0A0H2US34_S    35 VQMRTTINNESPLLLSPLYGNDNGNGLWWGNTLKGAWEAIPEDVKPYAAIELHPAKVCKPTSCIPRDTKELREWYVKMLEEAQSLNIPVFLVIMSAGERNTVPPEWLDEQFQKYSVLKGVLNIENYWIYNNQLAPHSAKYLEVCAKYGAHFIWHDHEKWFWETIMNDPTFFEASQKYHKNLVLATKNTPIRDDAGTDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFETGRARDMRSYASEPESMIAMEMMNVYTGGGTVYNFECAAYTFMTNDVPTPAFTKGIIPFFRHAIQNPAPSKEEVVNRTKAVFWNGEGRISSLNGFYQGLYSNDETMPLYNNGRYHILPVIHEKIDKEKISSIFPNAKILTKNSEELSSKVNYLNSLYPKLYEGDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTYAVVKENPNNLHILLNNYRTDKTAMWALSGNFDASKSWKKEELELANWISKNYSINPVDNDFRTTTLTLKGHTGHKPQINISGDKNHYTYTENWDENTHVYTITVNHNGMVEMSI 589
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeee............hhhhhhhh....hhh.eeeeeehhhhh.........hhhhhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh....eeeeeee.hhhhhh............hhhhhhh.hhhhhhhhhhhhhh....eeeeehhhhhhee..eehhhhhhhhhhhhhhhhhh...hhhhhhhhh.eeee.hhhhhhhh..........................ee....hhhhhhhhh...eee...hhhhhhhhhhhhh......ee..eeeee..eeeee.........eeeeee.......eeeeee....eeeeee....eeeeee.....hhhhhh.....hhhhh.hhhhhhhhhhhhhh..........eeeeeeee..--.....eeee....eeeeeeee....eeeeeeee..eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmg A  35 VQMRTTINNESPLLLSPLYGNDNGNGLWWGNTLKGAWEAIPEDVKPYAAIELHPAKVCKPTSCIPRDTKELREWYVKMLEEAQSLNIPVFLVIMSAGERNTVPPEWLDEQFQKYSVLKGVLNIANYWIYNNQLAPHSAKYLEVCAKYGAHFIWHDHEKWFWETIMNDPTFFEASQKYHKNLVLATKNTPIRDDAGTDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFETGRARDMRSYASEPESMIAMEMMNVYTGGGTVYNFECAAYTFMTNDVPTPAFTKGIIPFFRHAIQNPAPSKEEVVNRTKAVFWNGEGRISSLNGFYQGLYSNDETMPLYNNGRYHILPVIHEKIDKEKISSIFPNAKILTKNSEELSSKVNYLNSLYPKLYEGDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTYAVVKENPNNLHILLNNYRTDKTAMWALSGNFDASKSWKKEELELANWISKNYSINPVDNDFRTTTLTLKGH--HKPQINISGDKNHYTYTENWDENTHVYTITVNHNGMVEMKI 589
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544 |  |  554       564       574       584     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         546  |                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            549
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WMG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WMG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WMG)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WMG)

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  2wmg
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  A0A0H2US34_S | A0A0H2US34
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H2US34_S | A0A0H2US34: 2j1r 2j1s 2j1t 2j1u 2j1v 2j22 2wmf 2wmh

(-) Related Entries Specified in the PDB File

2j1r STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE
2j1s STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH FUCOSE
2j1t STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE LEWIS Y ANTIGEN
2j1u STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE BLOOD GROUP A-TETRASACCHARIDE
2j1v STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE BLOOD GROUP H-TRISACCHARIDE
2j22 STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE, SPX-3
2wmf CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE TIGR4 (SP4GH98) IN ITS NATIVE FORM.
2wmh CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH THE H-DISACCHARIDE BLOOD GROUP ANTIGEN.