2J22 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE, SPX-3

Authors :   A. B. Boraston, D. Wang, R. D. Burke

Date :   15 Aug 06 (Deposition) - 06 Sep 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Carbohydrate-Binding Protein, Carbohydrate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. B. Boraston, D. Wang, R. D. Burke
Blood Group Antigen Recognition By A Streptococcus Pneumoniae Virulence Factor
J. Biol. Chem. V. 281 35263 2006
PubMed-ID: 16987809 | Reference-DOI: 10.1074/JBC.M607620200

Molecule 1 - FUCOLECTIN-RELATED PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	FUCOSE BINDING MODULE, RESIDUES 897-1038
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4
	Synonym	:	FUCOSE BINDING MODULE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 2)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	GOL	1	Ligand/Ion	GLYCEROL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:35 , ASP A:38 , ASN A:40 , SER A:49 , ALA A:141 , GLU A:142	BINDING SITE FOR RESIDUE CA A1150
2	AC2	SOFTWARE	HOH A:2128	BINDING SITE FOR RESIDUE GOL A1151

(no "SS Bond" information available for 2J22)

Asymmetric/Biological Unit

No.	Residues
1	Ser A:57	-	Pro A:58

(no "SAP(SNP)/Variant" information available for 2J22)

(no "PROSITE Motif" information available for 2J22)

(no "Exon" information available for 2J22)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:137
 aligned with A0A0H2US34_S | A0A0H2US34 from UniProtKB/TrEMBL  Length:1038

    Alignment length:137
                                   911       921       931       941       951       961       971       981       991      1001      1011      1021      1031       
        A0A0H2US34_S    902 LSNIALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIYDSNDYEVFTQHIDSLESNNLSIDLKGLKGKKVRISLRSAGIPLSLAEVEVYTYK 1038
               SCOP domains d2j22a_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhh.....hhhhh...........eeeeeeeeeeeeeeeeeee....hhhh.eeeeeeee.....eeeeeeeee....eeeeeeeeeeeeeeeeee........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2j22 A   13 LSNIALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKEDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIYDSNDYEVFTQHIDSLESNNLSIDLKGLKGKKVRISLRSAGIPLSLAEVEVYTYK  149
                                    22        32        42        52        62        72        82        92       102       112       122       132       142

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Galactose-binding domain-like (314)

Superfamily: Galactose-binding domain-like (314)

Family: automated matches (85)

Protein domain: automated matches (85)

Streptococcus pneumoniae [TaxId: 170187] (6)

d2j22a_

(no "CATH Domain" information available for 2J22)

(no "Pfam Domain" information available for 2J22)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2J22)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:57 - Pro A:58	[ RasMol ]

Jmol
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Access by PDB/NDB ID
	2j22
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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Access by UniProt ID/Accession number
	A0A0H2US34_S \| A0A0H2US34
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		Protein-protein Interaction	:	DIP
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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	A0A0H2US34_S \| A0A0H2US34
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UniProtKB/TrEMBL
	A0A0H2US34_S \| A0A0H2US34	:	2j1r 2j1s 2j1t 2j1u 2j1v 2wmf 2wmg 2wmh

2j1r	STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE
2j1s	STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH FUCOSE
2j1t	STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE LEWIS Y ANTIGEN
2j1u	STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE BLOOD GROUP A-TETRASACCHARIDE
2j1v	STRUCTURE OF A STREPTOCOCCUS PNEUMONIAE FUCOSE BINDING MODULE IN COMPLEX WITH THE BLOOD GROUP H-TRISACCHARIDE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

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Related Entries Specified in the PDB File