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(-) Description

Title :  BIFUNCTIONAL DCTP DEAMINASE:DUTPASE FROM MYCOBACTERIUM TUBERCULOSIS, APO FORM
 
Authors :  S. Christophersen, P. Harris, M. Willemoes
Date :  13 Jul 07  (Deposition) - 19 Feb 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Distorted Beta Barrel, Hydrolase, Nucleotide Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Helt, M. Thymark, P. Harris, C. Aagaard, J. Dietrich, S. Larsen, M. Willemoes
Mechanism Of Dttp Inhibition Of The Bifunctional Dctp Deaminase:Dutpase Encoded By Mycobacterium Tuberculosis
J. Mol. Biol. V. 376 554 2007
PubMed-ID: 18164314  |  Reference-DOI: 10.1016/J.JMB.2007.11.099

(-) Compounds

Molecule 1 - DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PTBDCD7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET11A
    Gene: DCD
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: DCTP DEAMINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
11PE7Ligand/IonPENTAETHYLENE GLYCOL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:106 , LEU A:107 , ARG C:41 , LEU C:81 , SER C:83BINDING SITE FOR RESIDUE 1PE A 162
2AC2SOFTWAREARG A:41BINDING SITE FOR RESIDUE 1PE A 163
3AC3SOFTWAREARG B:41 , SER B:83 , THR B:127 , ARG C:106BINDING SITE FOR RESIDUE 1PE B 162
4AC4SOFTWAREGLN C:65 , VAL C:67 , ASP C:68BINDING SITE FOR RESIDUE 1PE C 162
5AC5SOFTWAREARG D:41 , GLY D:82 , SER D:83 , ARG E:106BINDING SITE FOR RESIDUE 1PE D 162
6AC6SOFTWAREARG E:41 , LEU E:81 , GLY E:82 , THR E:127BINDING SITE FOR RESIDUE 1PE E 162
7AC7SOFTWAREARG D:106 , ARG F:41 , SER F:83BINDING SITE FOR RESIDUE 1PE F 162

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QLP)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Asp A:20 -Pro A:21
2Asp B:20 -Pro B:21
3Ser B:113 -Thr B:114
4Asp C:20 -Pro C:21
5Ser C:113 -Thr C:114
6Asp D:20 -Pro D:21
7Ser D:113 -Thr D:114
8Asp E:20 -Pro E:21
9Asp F:20 -Pro F:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QLP)

(-) Exons   (0, 0)

(no "Exon" information available for 2QLP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHP 161
               SCOP domains d2qlpa_ A: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.............hhh.eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp A   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHP 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 


Chain A from PDB  Type:PROTEIN  Length:161
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHP 161
               SCOP domains d2qlpa_ A: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.............hhh.eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp A   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHP 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpb_ B: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh....eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeeeeeeeee....eeeeee.hhhhhh..ee......ee....eeeeeeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp B   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpb_ B: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh....eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeeeeeeeee....eeeeee.hhhhhh..ee......ee....eeeeeeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp B   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain C from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpc_ C: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp C   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain C from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpc_ C: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp C   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain D from PDB  Type:PROTEIN  Length:160
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEH 160
               SCOP domains d2qlpd_ D: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.............hhh.eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp D   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEH 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain D from PDB  Type:PROTEIN  Length:160
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEH 160
               SCOP domains d2qlpd_ D: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.............hhh.eeee.......eee....eeeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp D   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEH 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160


Chain E from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpe_ E: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeeeeeeeee....eeeeee.hhhhhh..ee......ee....eeeeeeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp E   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain E from PDB  Type:PROTEIN  Length:159
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
               SCOP domains d2qlpe_ E: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee....eeeeeeeeeee....eeeeee.hhhhhh..ee......ee....eeeeeeeeee.....eee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp E   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         


Chain F from PDB  Type:PROTEIN  Length:158
 aligned with DCD_MYCTO | P9WP16 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            DCD_MYCTO     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPS 158
               SCOP domains d2qlpf_ F: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------dUTPase-2qlpF01 F:52-158                                                                                    Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------dUTPase-2qlpF02 F:52-158                                                                                    Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------dUTPase-2qlpF03 F:52-158                                                                                    Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------dUTPase-2qlpF04 F:52-158                                                                                    Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------dUTPase-2qlpF05 F:52-158                                                                                    Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------dUTPase-2qlpF06 F:52-158                                                                                    Pfam domains (6)
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee.....eeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp F   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPS 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain F from PDB  Type:PROTEIN  Length:158
 aligned with DCD_MYCTU | P9WP17 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            DCD_MYCTU     1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPS 158
               SCOP domains d2qlpf_ F: Deoxycytidine triphosphate deaminase (dCTP deaminase)                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------dUTPase-2qlpF01 F:52-158                                                                                    Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------dUTPase-2qlpF02 F:52-158                                                                                    Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------dUTPase-2qlpF03 F:52-158                                                                                    Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------dUTPase-2qlpF04 F:52-158                                                                                    Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------dUTPase-2qlpF05 F:52-158                                                                                    Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------dUTPase-2qlpF06 F:52-158                                                                                    Pfam domains (6)
         Sec.struct. author ...hhhhhhhhhhh...eee..hhh.ee..eeeee....eeee.................eeee.......eee.....eeee...eee....eeeeee.hhhhhh..ee......ee....ee..eeeeee.....eee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qlp F   1 MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPS 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QLP)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: dUTPase (38)

(-) Gene Ontology  (11, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DCD_MYCTO | P9WP16)
molecular function
    GO:0008829    dCTP deaminase activity    Catalysis of the reaction: dCTP + H2O = dUTP + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0006226    dUMP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
    GO:0006229    dUTP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUTP, deoxyuridine (5'-)triphosphate.
    GO:0046080    dUTP metabolic process    The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0009220    pyrimidine ribonucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

Chain A,B,C,D,E,F   (DCD_MYCTU | P9WP17)
molecular function
    GO:0033973    dCTP deaminase (dUMP-forming) activity    Catalysis of the reaction: dCTP + 2 H(2)O = diphosphate + dUMP + H(+) + NH(4)(+).
    GO:0008829    dCTP deaminase activity    Catalysis of the reaction: dCTP + H2O = dUTP + NH3.
    GO:0004170    dUTP diphosphatase activity    Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0006226    dUMP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
    GO:0006229    dUTP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUTP, deoxyuridine (5'-)triphosphate.
    GO:0046080    dUTP metabolic process    The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
    GO:0015949    nucleobase-containing small molecule interconversion    The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0009220    pyrimidine ribonucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCD_MYCTO | P9WP16: 2qxx 4a6a
        DCD_MYCTU | P9WP17: 2qxx 4a6a

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QLP)