Chain A from PDB Type:PROTEIN Length:542
aligned with PCRA_GEOSE | P56255 from UniProtKB/Swiss-Prot Length:724
Alignment length:542
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546
PCRA_GEOSE 7 QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD 548
SCOP domains d2pjra1 A:7-318 DEXX box DNA helicase d2pjr.1 A:319-548,B: DEXX box DNA helicase SCOP domains
CATH domains ----2pjrA01 A:11-115,A:194-282 P-loop containing nucleotide triphosphate hydrolases 2pjrA02 A:116-190 [code=1.10.10.160, no name defined] ---2pjrA01 A:11-115,A:194-282 P-loop containing nucleotide triphosphate hydrolases 2pjrA03 A:283-385,A:546-548 P-loop containing nucleotide triphosphate hydrolases -2pjrA04 A:387-543 PCRA; domain 4 --2pj CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhh...hhh.eeeee.hhhhhhhhhhhh.....hhhhhheeeehhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhh.....eeeeehhhhh.hhhhh.hhhhhhhhhhhh...eeeee.ee...hhhhhhhhhhhhh..........ee.......eeeeee.hhhhhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---UVRD_HELICASE_ATP_BIND PDB: A:10-289 UniProt: 10-289 UVRD_HELICASE_CTER PDB: A:290-548 UniProt: 290-569 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pjr A 7 QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD 548
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546
Chain B from PDB Type:PROTEIN Length:95
aligned with PCRA_GEOSE | P56255 from UniProtKB/Swiss-Prot Length:724
Alignment length:95
565 575 585 595 605 615 625 635 645
PCRA_GEOSE 556 GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETAS 650
SCOP domains d2pjr.1 A:319-548,B: DEXX box DNA helicase SCOP domains
CATH domains ----------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeee........eeeeee..........hhhh.hhhhhhhhhhhhhhhhh.eeeeeeeeee..............hhhhhhhhhh.eee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE UVRD_HELICASE_--------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------- Transcript
2pjr B 556 GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETAS 650
565 575 585 595 605 615 625 635 645
Chain C from PDB Type:DNA Length:5
2pjr C 13 TTTTT 17
Chain D from PDB Type:DNA Length:5
2pjr D 13 TTTTT 17
Chain F from PDB Type:PROTEIN Length:544
aligned with PCRA_GEOSE | P56255 from UniProtKB/Swiss-Prot Length:724
Alignment length:544
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473 483 493 503 513 523 533 543
PCRA_GEOSE 4 LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEL 547
SCOP domains d2pjrf1 F:704-1018 DEXX box DNA helicase d2pjr.2 F:1019-1247,G: DEXX box DNA helicase SCOP domains
CATH domains -------2pjrF01 F:711-815,F:894-982 P-loop containing nucleotide triphosphate hydrolases 2pjrF02 F:816-890 [code=1.10.10.160, no name defined] ---2pjrF01 F:711-815,F:894-982 P-loop containing nucleotide triphosphate hydrolases 2pjrF03 F:983-1085,F:1246-1247 P-loop containing nucleotide triphosphate hydrolases -2pjrF04 F:1087-1243 PCRA; domain 4 --2p CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhhhhh....eeeee....hhhhhhhhhhhhhh.....hhh.eeeee.hhhhhhhhhhhhh..........eeeehhhhhhhhhhhhhhhhh.....ee.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhh.....eeeeehhhhh........hhhhhhhhhhh...eeeee.ee...hhhhhhhhhhhhh..........ee.......eeeeee.hhhhhhhhhhhhhhhhhh....hhh.eeeee.hhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhh.....hhhhhhh..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh...... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------UVRD_HELICASE_ATP_BIND PDB: F:710-989 UniProt: 10-289 UVRD_HELICASE_CTER PDB: F:990-1247 UniProt: 290-569 PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pjr F 704 LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEL 1247
713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873 883 893 903 913 923 933 943 953 963 973 983 993 1003 1013 1023 1033 1043 1053 1063 1073 1083 1093 1103 1113 1123 1133 1143 1153 1163 1173 1183 1193 1203 1213 1223 1233 1243
Chain G from PDB Type:PROTEIN Length:95
aligned with PCRA_GEOSE | P56255 from UniProtKB/Swiss-Prot Length:724
Alignment length:95
565 575 585 595 605 615 625 635 645
PCRA_GEOSE 556 GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETAS 650
SCOP domains d2pjr.2 F:1019-1247,G: DEXX box DNA helicase SCOP domains
CATH domains ----------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeee........eeeeee..........hhhhh....hhhhhhhhhhhhh.eeeeeeeeee................hhhhh....eee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE UVRD_HELICASE_--------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------- Transcript
2pjr G 1248 GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETAS 1342
1257 1267 1277 1287 1297 1307 1317 1327 1337
Chain H from PDB Type:DNA Length:2
2pjr H 1 GC 2
Chain I from PDB Type:DNA Length:5
2pjr I 30 ACTGC 34
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |