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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL TUDOR DOMAIN IN PCRA/UVRD HELICASE
 
Authors :  C. L. Lin, M. Dillingham, D. Wigley
Date :  08 Sep 15  (Deposition) - 28 Sep 16  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Rna Polymerase, Pcra/Uvrd Helicase, Tudor Domain, Transcription, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Sanders, C. L. Lin, A. J. Smith, N. Cronin, G. Fisher, V. Eftychidis, P. Mcglynn, N. J. Savery, D. B. Wigley, M. S. Dillingham
The Structure And Function Of An Rna Polymerase Interaction Domain In The Pcra/Uvrd Helicase.
Nucleic Acids Res. V. 45 3875 2017
PubMed-ID: 28160601  |  Reference-DOI: 10.1093/NAR/GKX074

(-) Compounds

Molecule 1 - ATP-DEPENDENT DNA HELICASE PCRA
    Chains: A
    EC Number: 3.6.4.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET47B
    Expression System Taxid: 562
    Fragment: C-TERMINAL TUDOR DOMAIN, UNP RESIDUES 671-724
    Gene: PCRA
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DMA)

(-) Sites  (0, 0)

(no "Site" information available for 5DMA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DMA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:707 -Pro A:708

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DMA)

(-) Exons   (0, 0)

(no "Exon" information available for 5DMA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeeeeeee.hhhh.eeeeee....eeeeee.....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 5dma A 672 GWKVGDRANHRKWGIGTVVSVRGGGDDQELDIAFPSPIGIKRLLAKFAPIEKV 724
                                   681       691       701       711       721
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DMA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DMA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DMA)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser A:707 - Pro A:708   [ RasMol ]  
 

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  5dma
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCRA_GEOSE | P56255: 1pjr 1qhg 1qhh 2pjr 3pjr

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5DMA)