2OO5 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF TRANSHYDROGENASE (DI.H2NADH)2(DIII.NADP+)1 ASYMMETRIC COMPLEX

Authors :   T. Bhakta, J. B. Jackson

Date :   25 Jan 07 (Deposition) - 13 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Rossmann Fold; Nad(H)-Binding Site; Nadp(H)-Binding Site, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Bhakta, S. J. Whitehead, J. S. Snaith, T. R. Dafforn, J. Wilkie, S. Rajesh, S. A. White, J. B. Jackson
Structures Of The Di(2)Diii(1) Complex Of Proton-Translocating Transhydrogenase With Bound, Inactive Analogues Of Nadh And Nadph Reveal Active Site Geometries
Biochemistry V. 46 3304 2007
PubMed-ID: 17323922 | Reference-DOI: 10.1021/BI061843R
(for further references see the PDB file header)

Molecule 1 - NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA PART 1
	Chains	:	A, B
	EC Number	:	1.6.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCD1
	Expression System Strain	:	C600
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PNTAA, NNTA1
	Organism Scientific	:	RHODOSPIRILLUM RUBRUM
	Organism Taxid	:	1085
	Synonym	:	PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1

Molecule 2 - NAD(P) TRANSHYDROGENASE SUBUNIT BETA
	Chains	:	C
	EC Number	:	1.6.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PNIC2
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 262-464
	Gene	:	PNTB, NNTB
	Organism Scientific	:	RHODOSPIRILLUM RUBRUM
	Organism Taxid	:	1085
	Synonym	:	PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 7)

No.	Name	Count	Type	Full Name
1	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2	SO4	4	Ligand/Ion	SULFATE ION
3	TXD	2	Ligand/Ion	1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:147 , ARG A:326 , TYR B:154	BINDING SITE FOR RESIDUE SO4 B 385
2	AC2	SOFTWARE	THR A:169 , PRO A:171 , SO4 A:386 , ASP B:330 , PRO B:333	BINDING SITE FOR RESIDUE SO4 B 386
3	AC3	SOFTWARE	TYR A:154 , LYS A:316 , ARG B:147 , ARG B:326	BINDING SITE FOR RESIDUE SO4 A 385
4	AC4	SOFTWARE	ARG A:158 , HOH A:501 , HOH A:510 , PRO B:333 , SO4 B:386	BINDING SITE FOR RESIDUE SO4 A 386
5	AC5	SOFTWARE	SER B:129 , TXD B:600 , GLY C:54 , TYR C:55 , GLY C:56 , ALA C:60 , VAL C:87 , GLY C:89 , ARG C:90 , MET C:91 , PRO C:92 , GLY C:129 , ALA C:130 , ASN C:131 , ASP C:132 , VAL C:133 , LYS C:164 , ARG C:165 , SER C:166 , GLY C:170 , TYR C:171 , GLY C:189 , ASP C:190 , ALA C:191	BINDING SITE FOR RESIDUE NAP C 400
6	AC6	SOFTWARE	ARG A:127 , ILE A:128 , GLN A:132 , ASP A:135 , GLY A:179 , GLY A:181 , VAL A:182 , ASP A:202 , VAL A:203 , ARG A:204 , GLY A:234 , ALA A:236 , GLN A:247 , THR A:264 , ALA A:265 , LEU A:266 , PRO A:273 , LEU A:275	BINDING SITE FOR RESIDUE TXD A 500
7	AC7	SOFTWARE	ARG B:127 , ILE B:128 , SER B:129 , GLN B:132 , SER B:138 , GLY B:179 , VAL B:180 , GLY B:181 , VAL B:182 , ASP B:202 , VAL B:203 , ARG B:204 , GLY B:234 , TYR B:235 , ALA B:236 , GLN B:247 , THR B:264 , ALA B:265 , LEU B:266 , PRO B:273 , LEU B:275 , HOH B:607 , TYR C:171 , NAP C:400	BINDING SITE FOR RESIDUE TXD B 600

(no "SS Bond" information available for 2OO5)

(no "Cis Peptide Bond" information available for 2OO5)

(no "SAP(SNP)/Variant" information available for 2OO5)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALADH_PNT_1	PS00836	Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1.	PNTAA_RHORT	4-30	2	A:4-30 B:4-30
1	ALADH_PNT_1	PS00836		PNTAA_RHORU	4-30	2	A:4-30 B:4-30
2	ALADH_PNT_2	PS00837	Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2.	PNTAA_RHORT	177-202	2	A:177-202 B:177-202
2	ALADH_PNT_2	PS00837		PNTAA_RHORU	177-202	2	A:177-202 B:177-202

(no "Exon" information available for 2OO5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:380
 aligned with PNTAA_RHORT | Q2RSB2 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
          PNTAA_RHORT     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
               SCOP domains d2oo5a2 A:1-143,A:327-380 Nicotinamide nucleotide transhydrogenase dI component                                                                d2oo5a1 A:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2oo5a2 A:1-143,A:327-380                              SCOP domains
               CATH domains -2oo5A01 A:2-143,A:327-370  [code=3.40.50.1770, no name defined]                                                                               2oo5A02 A:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2oo5A01 A:2-143,A:327-370                   ---------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhh...eeeeee...hhhhh.hhhhhh....eeeee.....hhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhh..eeeee....hhhhhhhhh..ee...hhhhhhh..........hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhh.....eeee.hhhhh.........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---ALADH_PNT_1  PDB: A:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: A:177-20---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oo5 A   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain A from PDB  Type:PROTEIN  Length:380
 aligned with PNTAA_RHORU | P0C186 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
          PNTAA_RHORU     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
               SCOP domains d2oo5a2 A:1-143,A:327-380 Nicotinamide nucleotide transhydrogenase dI component                                                                d2oo5a1 A:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2oo5a2 A:1-143,A:327-380                              SCOP domains
               CATH domains -2oo5A01 A:2-143,A:327-370  [code=3.40.50.1770, no name defined]                                                                               2oo5A02 A:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2oo5A01 A:2-143,A:327-370                   ---------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhh...eeeeee...hhhhh.hhhhhh....eeeee.....hhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhh..eeeee....hhhhhhhhh..ee...hhhhhhh..........hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhh.....eeee.hhhhh.........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---ALADH_PNT_1  PDB: A:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: A:177-20---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oo5 A   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:380
 aligned with PNTAA_RHORT | Q2RSB2 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
          PNTAA_RHORT     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
               SCOP domains d2oo5b2 B:1-143,B:327-380 Nicotinamide nucleotide transhydrogenase dI component                                                                d2oo5b1 B:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2oo5b2 B:1-143,B:327-380                              SCOP domains
               CATH domains -2oo5B01 B:2-143,B:327-370  [code=3.40.50.1770, no name defined]                                                                               2oo5B02 B:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2oo5B01 B:2-143,B:327-370                   ---------- CATH domains
           Pfam domains (1) ---AlaDh_PNT_N-2oo5B01 B:4-144                                                                                                                  --------AlaDh_PNT_C-2oo5B03 B:153-319                                                                                                                                          ------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---AlaDh_PNT_N-2oo5B02 B:4-144                                                                                                                  --------AlaDh_PNT_C-2oo5B04 B:153-319                                                                                                                                          ------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhh...eee......hhhhh..hhhhh....eeee......hhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......ee....ee...eeeee..hhhhhhhhhhhhhh..eeeee....hhhhhhhh...ee...hhhhhh............hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhh....eeee.hhhhh.........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhh..ee....ee.....hhhhhhheeee..ee.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---ALADH_PNT_1  PDB: B:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: B:177-20---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oo5 B   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:380
 aligned with PNTAA_RHORU | P0C186 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
          PNTAA_RHORU     1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
               SCOP domains d2oo5b2 B:1-143,B:327-380 Nicotinamide nucleotide transhydrogenase dI component                                                                d2oo5b1 B:144-326 Nicotinamide nucleotide transhydrogenase dI component                                                                                                                d2oo5b2 B:1-143,B:327-380                              SCOP domains
               CATH domains -2oo5B01 B:2-143,B:327-370  [code=3.40.50.1770, no name defined]                                                                               2oo5B02 B:144-326 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2oo5B01 B:2-143,B:327-370                   ---------- CATH domains
           Pfam domains (1) ---AlaDh_PNT_N-2oo5B01 B:4-144                                                                                                                  --------AlaDh_PNT_C-2oo5B03 B:153-319                                                                                                                                          ------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---AlaDh_PNT_N-2oo5B02 B:4-144                                                                                                                  --------AlaDh_PNT_C-2oo5B04 B:153-319                                                                                                                                          ------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeee.............hhhhhhhhhhhh.eeeee.........hhhhhhhhh.eee.hhhhhhh...eee......hhhhh..hhhhh....eeee......hhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......ee....ee...eeeee..hhhhhhhhhhhhhh..eeeee....hhhhhhhh...ee...hhhhhh............hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhh....eeee.hhhhh.........eeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhh..ee....ee.....hhhhhhheeee..ee.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---ALADH_PNT_1  PDB: B:4-30   --------------------------------------------------------------------------------------------------------------------------------------------------ALADH_PNT_2  PDB: B:177-20---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oo5 B   1 MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALT 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain C from PDB  Type:PROTEIN  Length:174
 aligned with PNTB_RHORU | P0C188 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:174
                                   300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460    
           PNTB_RHORU   291 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 464
               SCOP domains d2oo5c_ C: Transhydrogenase domain III (dIII)                                                                                                                                  SCOP domains
               CATH domains 2oo5C00 C:30-203 TPP-binding domain                                                                                                                                            CATH domains
               Pfam domains PNTB-2oo5C01 C:30-202                                                                                                                                                        - Pfam domains
         Sec.struct. author .....hhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhh..hhh.eeehhhhhhhhh...eeeee.......hhhhhh...........hhhhh.eeeeee...........hhhhh...eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oo5 C  30 SVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAMN 203
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1770, no name defined] (22)

Rhodospirillum rubrum. Organism_taxid: 1085. (11)

1a	2oo5A01	A:2-143,A:327-370
1b	2oo5B01	B:2-143,B:327-370

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Rhodospirillum rubrum. Organism_taxid: 1085. (11)

2a	2oo5A02	A:144-326
2b	2oo5B02	B:144-326

Homologous Superfamily: TPP-binding domain (120)

Rhodospirillum rubrum. Organism_taxid: 1085. (13)

2oo5C00

C:30-203

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: FAD_DHS (82)

Family: PNTB (11)

Rhodospirillum rubrum (9)

PNTB-2oo5C01

C:30-202

Clan: Form_Glyc_dh (56)

Family: AlaDh_PNT_N (24)

Rhodospirillum rubrum (9)

2a	AlaDh_PNT_N-2oo5B01	B:4-144
2b	AlaDh_PNT_N-2oo5B02	B:4-144

Clan: NADP_Rossmann (1239)

Family: AlaDh_PNT_C (25)

Rhodospirillum rubrum (9)

3a	AlaDh_PNT_C-2oo5B03	B:153-319
3b	AlaDh_PNT_C-2oo5B04	B:153-319

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PNTAA_RHORT | Q2RSB2)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0008750	NAD(P)+ transhydrogenase (AB-specific) activity	Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
	GO:0003957	NAD(P)+ transhydrogenase (B-specific) activity	Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+, driving the transfer of a solute or solutes from one side of a membrane to the other. In the course of the reaction (left to right) one H atom is transferred from inside the cell to outside. The reaction is B-specific (i.e. the pro-S hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to both NAD+ and NADP+.
	GO:0070403	NAD+ binding	Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0070404	NADH binding	Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
biological process
	GO:0006740	NADPH regeneration	A metabolic process that generates a pool of NADPH by the reduction of NADP+.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A,B (PNTAA_RHORU | P0C186)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0008750	NAD(P)+ transhydrogenase (AB-specific) activity	Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
	GO:0070403	NAD+ binding	Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0070404	NADH binding	Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006740	NADPH regeneration	A metabolic process that generates a pool of NADPH by the reduction of NADP+.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C (PNTB_RHORU | P0C188)

molecular function
	GO:0008750	NAD(P)+ transhydrogenase (AB-specific) activity	Catalysis of the reaction: NADPH + H+ + NAD+ = NADP+ + NADH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD+ and B-specific (i.e. the pro-S hydrogen is transferred) with respect to NADP+.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (0, 0)

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